PDB entry 2vfg
View 2vfg on RCSB PDB site
Description: crystal structure of the f96h mutant of plasmodium falciparum triosephosphate isomerase with 3-phosphoglycerate bound at the dimer interface
Class: isomerase
Keywords: plasmodium falciparum, fatty acid biosynthesis, triosephosphate isomerase, pentose shunt, gluconeogenesis, lipid synthesis, tim, mutant, loop open, isomerase, glycolysis
Deposited on
2007-11-04, released
2008-12-09
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-08-04, with a file datestamp of
2009-07-31.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.21028
AEROSPACI score: 0.45
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: triosephosphate isomerase
Species: PLASMODIUM FALCIPARUM [TaxId:5833]
Database cross-references and differences (RAF-indexed):
- Uniprot Q07412 (Start-247)
- engineered mutation (95)
- engineered mutation (162)
Domains in SCOPe 2.08: d2vfga_ - Chain 'B':
Compound: triosephosphate isomerase
Species: PLASMODIUM FALCIPARUM [TaxId:5833]
Database cross-references and differences (RAF-indexed):
- Uniprot Q07412 (Start-247)
- engineered mutation (95)
- engineered mutation (162)
Domains in SCOPe 2.08: d2vfgb_ - Chain 'C':
Compound: triosephosphate isomerase
Species: PLASMODIUM FALCIPARUM [TaxId:5833]
Database cross-references and differences (RAF-indexed):
- Uniprot Q07412 (Start-247)
- engineered mutation (95)
- engineered mutation (162)
Domains in SCOPe 2.08: d2vfgc_ - Chain 'D':
Compound: triosephosphate isomerase
Species: PLASMODIUM FALCIPARUM [TaxId:5833]
Database cross-references and differences (RAF-indexed):
- Uniprot Q07412 (Start-247)
- engineered mutation (95)
- engineered mutation (162)
Domains in SCOPe 2.08: d2vfgd_ - Heterogens: 3PG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vfgA (A:)
markyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfs
tgiqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknn
lkavvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeq
aqlvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesf
vdiiksam
Sequence, based on observed residues (ATOM records): (download)
>2vfgA (A:)
arkyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfst
giqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknnl
kavvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeqa
qlvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesfv
diiksam
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2vfgB (B:)
markyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfs
tgiqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknn
lkavvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeq
aqlvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesf
vdiiksam
Sequence, based on observed residues (ATOM records): (download)
>2vfgB (B:)
rkyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfstg
iqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknnlk
avvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeqaq
lvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesfvd
iiksam
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2vfgC (C:)
markyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfs
tgiqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknn
lkavvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeq
aqlvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesf
vdiiksam
Sequence, based on observed residues (ATOM records): (download)
>2vfgC (C:)
arkyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfst
giqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknnl
kavvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeqa
qlvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesfv
diiksam
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2vfgD (D:)
markyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfs
tgiqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknn
lkavvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeq
aqlvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesf
vdiiksam
Sequence, based on observed residues (ATOM records): (download)
>2vfgD (D:)
rkyfvaanwkcngtlesiksltnsfnnldfdpskldvvvfpvsvhydhtrkllqskfstg
iqnvskfgngsytgevsaeiakdlnieyviighherrkyfhetdedvreklqaslknnlk
avvcfgesleqreqnktievitkqvkafvdlidnfdnvilvyeplwaigtgktatpeqaq
lvhkeirkivkdtcgekqanqirilyggsvntencssliqqedidgflvgnaslkesfvd
iiksam