PDB entry 2vee

View 2vee on RCSB PDB site
Description: Structure of protoglobin from Methanosarcina acetivorans C2A
Deposited on 2007-10-22, released 2008-01-22
The last revision was dated 2012-07-11, with a file datestamp of 2012-07-06.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.208
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Chain 'B':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Chain 'C':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Chain 'D':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Chain 'E':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Chain 'F':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Chain 'G':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Chain 'H':
    Compound: protoglobin
    Species: Methanosarcina acetivorans [TaxId:2214]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8TLY9 (Start-194)
      • engineered mutation (100)
  • Heterogens: HEM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2veeA (A:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeA (A:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2veeB (B:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeB (B:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2veeC (C:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeC (C:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2veeD (D:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeD (D:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2veeE (E:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeE (E:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2veeF (F:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeF (F:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2veeG (G:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeG (G:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2veeH (H:)
    msvekipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtw
    ygfvgshphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrh
    hrtkknqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattl
    qvalwsypyvkygdf
    

    Sequence, based on observed residues (ATOM records):
    >2veeH (H:)
    ipgytygetenrapfnledlkllkeavmftaedeeyiqkagevledqveeildtwygfvg
    shphllyyftspdgtpnekylaavrkrfsrwildtsnrsydqawldyqyeiglrhhrtkk
    nqtdnvesvpnigyrylvafiypitatmkpflarkghtpeevekmyqawfkattlqvalw
    sypyvkygdf