PDB entry 2vdy

View 2vdy on RCSB PDB site
Description: Crystal structure of the reactive loop cleaved Corticosteroid Binding Globulin complexed with Cortisol
Class: transport protein
Keywords: glycoprotein, lipid-binding, steroid-binding, disease mutation, corticosteroid binding globulin, transport protein, cbg, serpin, cleaved, secreted, cortisol, transport
Deposited on 2007-10-13, released 2008-05-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: corticosteroid-binding globulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08185 (Start-372)
      • conflict (294)
    • PDB 2VDY (325-338)
    Domains in SCOPe 2.08: d2vdya_
  • Chain 'B':
    Compound: corticosteroid-binding globulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08185 (Start-372)
      • conflict (294)
    • PDB 2VDY (325-338)
    Domains in SCOPe 2.08: d2vdyb_
  • Heterogens: HCY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2vdyA (A:)
snhhrglasanvdfafslykhlvalspkknifispvsismalamlslgtcghtraqllqg
lgfnlterseteihqgfqhlhqlfaksdtslemtmgnalfldgslellesfsadikhyye
sevlamnfqdwatasrqinsyvknktqgkivdlfsgldspailvlvnyiffkgtwtqpfd
lastreenfyvdettvvkvpmmlqsstisylhdselpcqlvqmnyvgngtvffilpdkgk
mntviaalsrdtinrwsagltssqvdlyipkvtisgvydlgdvleemgiadlfttqanfs
ritqdaqlksskvvhkavlqlneegteaagamfleaiprskpiilrfnqpfiimifdhft
wsslflarvmnpv

    Sequence, based on observed residues (ATOM records): (download) 
    >2vdyA (A:)
glasanvdfafslykhlvalspkknifispvsismalamlslgtcghtraqllqglgfnl
seteihqgfqhlhqlfaksdtslemtmgnalfldgslellesfsadikhyyesevlamnf
qdwatasrqinsyvknktqgkivdlfdspailvlvnyiffkgtwtqpfdlastreenfyv
dettvvkvpmmlqsstisylhdselpcqlvqmnyvgngtvffilpdkgkmntviaalsrd
tinrwsagltssqvdlyipkvtisgvydlgdvleemgiadlfttqanfsritqdaqlkss
kvvhkavlqlneegteaagamfleaiprkpiilrfnqpfiimifdhftwsslflarvmnp
v

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vdyB (B:)
snhhrglasanvdfafslykhlvalspkknifispvsismalamlslgtcghtraqllqg
lgfnlterseteihqgfqhlhqlfaksdtslemtmgnalfldgslellesfsadikhyye
sevlamnfqdwatasrqinsyvknktqgkivdlfsgldspailvlvnyiffkgtwtqpfd
lastreenfyvdettvvkvpmmlqsstisylhdselpcqlvqmnyvgngtvffilpdkgk
mntviaalsrdtinrwsagltssqvdlyipkvtisgvydlgdvleemgiadlfttqanfs
ritqdaqlksskvvhkavlqlneegteaagamfleaiprskpiilrfnqpfiimifdhft
wsslflarvmnpv

    Sequence, based on observed residues (ATOM records): (download) 
    >2vdyB (B:)
glasanvdfafslykhlvalspkknifispvsismalamlslgtcghtraqllqglgfnl
seteihqgfqhlhqlfaksdtslemtmgnalfldgslellesfsadikhyyesevlamnf
qdwatasrqinsyvknktqgkivdlfsspailvlvnyiffkgtwtqpfdlastreenfyv
dettvvkvpmmlqsstisylhdselpcqlvqmnyvgngtvffilpdkgkmntviaalsrd
tinrwsagltssqvdlyipkvtisgvydlgdvleemgiadlfttqanfsritqdaqlkss
kvvhkavlqlneegteaagamfleaiprkpiilrfnqpfiimifdhftwsslflarvmnp
v