PDB entry 2vdv

View 2vdv on RCSB PDB site
Description: structure of trm8, m7g methylation enzyme
Deposited on 2007-10-11, released 2007-12-18
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.2326
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'E':
    Compound: tRNA (guanine-N(7)-)-methyltransferase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12009 (Start-239)
    • PDB 2VDV
  • Chain 'F':
    Compound: tRNA (guanine-N(7)-)-methyltransferase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12009 (Start-239)
    • PDB 2VDV
  • Heterogens: SAM, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2vdvE (E:)
lpkkryyrqrahsnpfsdhqleypvspqdmdwsklypyyknaengqmtkkvtiadigcgf
gglmidlspafpedlilgmeirvqvtnyvedriialrnntaskhgfqninvlrgnamkfl
pnffekgqlskmffcfpdphfkqrkhkariitntllseyayvlkeggvvytitdvkdlhe
wmvkhleehplferlskeweendecvkimrnateegkkverkkgdkfvacftrlptpail
hhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vdvE (E:)
npfsdhqleypvspqdmdwsklypyyknqmtkkvtiadigcgfgglmidlspafpedlil
gmeirvqvtnyvedriialrnntskhgfqninvlrgnamkflpnffekgqlskmffcfpd
phkariitntllseyayvlkeggvvytitdvkdlhewmvkhleehplferlskeweende
cvkimrnateegkkverkkgdkfvacftrlptpail

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vdvF (F:)
lpkkryyrqrahsnpfsdhqleypvspqdmdwsklypyyknaengqmtkkvtiadigcgf
gglmidlspafpedlilgmeirvqvtnyvedriialrnntaskhgfqninvlrgnamkfl
pnffekgqlskmffcfpdphfkqrkhkariitntllseyayvlkeggvvytitdvkdlhe
wmvkhleehplferlskeweendecvkimrnateegkkverkkgdkfvacftrlptpail
hhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vdvF (F:)
npfsdhqleypvspqdmdwsklypyyknqmtkkvtiadigcgfgglmidlspafpedlil
gmeirvqvtnyvedriialrnntskhgfqninvlrgnamkflpnffekgqlskmffcfpd
phkariitntllseyayvlkeggvvytitdvkdlhewmvkhleehplferlskeweende
cvkimrnateegkkverkkgdkfvacftrlptpail