PDB entry 2vdu

View 2vdu on RCSB PDB site
Description: structure of trm8-trm82, the yeast trna m7g methylation complex
Deposited on 2007-10-11, released 2007-12-18
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.228
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: tRNA (guanine-n(7)-)-methyltransferase-associated wd repeat protein trm82
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03774
    • PDB 2VDU (286-291)
  • Chain 'D':
    Compound: tRNA (guanine-n(7)-)-methyltransferase-associated wd repeat protein trm82
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03774
    • PDB 2VDU (286-291)
  • Chain 'E':
    Compound: tRNA (guanine-N(7)-)-methyltransferase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: tRNA (guanine-N(7)-)-methyltransferase
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vduB (B:)
    msvihplqnlltsrdgslvfaiikncilsfkyqspnhwefagkwsddfdkiqesrnttak
    eqqgqssenenenkklksnkgdsikrtaakvpspglgappiysyirnlrltsdesrliac
    adsdksllvfdvdktsknvlklrkrfcfskrpnaisiaeddttviiadkfgdvysidins
    ipeekftqepilghvsmltdvhlikdsdghqfiitsdrdehikishypqcfivdkwlfgh
    khfvssiccgkdylllsaggddkifawdwktgknlstfdynslikpylndqhlapprfqn
    enndiiefavskiiksknlpfvaffveatkciiilemsekqkgdlalkqiitfpynvisl
    sahndefqvtldnkessgvqknfakfieynlnensfvvnneksnefdsaiiqsvqgdsnl
    vtkkeeiyplynvsslrkhgehyshhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2vduB (B:)
    svihplqnlltsrdgslvfaiikncilsfkyqspnhwefagkwsddfpiysyirnlrlts
    desrliacadsdksllvfdvdktsknvlklrkrfcfskrpnaisiaeddttviiadkfgd
    vysidinsipeekftqepilghvsmltdvhlikdsdghqfiitsdrdehikishypqcfi
    vdkwlfghkhfvssiccgkdylllsaggddkifawdwktgknlstfdynslikpylndqh
    laiiefavskiiksknlpfvaffveatkciiilemsekqkgdlalkqiitfpynvislsa
    hndefqvtldnkessgvqknfakfieynlnensfvvnneksnefdsaiiqsvqgdsnlvt
    kkeeiyplynvssl
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vduD (D:)
    msvihplqnlltsrdgslvfaiikncilsfkyqspnhwefagkwsddfdkiqesrnttak
    eqqgqssenenenkklksnkgdsikrtaakvpspglgappiysyirnlrltsdesrliac
    adsdksllvfdvdktsknvlklrkrfcfskrpnaisiaeddttviiadkfgdvysidins
    ipeekftqepilghvsmltdvhlikdsdghqfiitsdrdehikishypqcfivdkwlfgh
    khfvssiccgkdylllsaggddkifawdwktgknlstfdynslikpylndqhlapprfqn
    enndiiefavskiiksknlpfvaffveatkciiilemsekqkgdlalkqiitfpynvisl
    sahndefqvtldnkessgvqknfakfieynlnensfvvnneksnefdsaiiqsvqgdsnl
    vtkkeeiyplynvsslrkhgehyshhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2vduD (D:)
    svihplqnlltsrdgslvfaiikncilsfkyqspnhwefagkwsddfpiysyirnlrlts
    desrliacadsdksllvfdvdktsknvlklrkrfcfskrpnaisiaeddttviiadkfgd
    vysidinsipeekftqepilghvsmltdvhlikdsdghqfiitsdrdehikishypqcfi
    vdkwlfghkhfvssiccgkdylllsaggddkifawdwktgknlstfdynslikpylndqh
    lappiiefavskiiksknlpfvaffveatkciiilemsekqkgdlalkqiitfpynvisl
    sahndefqvtldnkessgvqknfakfieynlnensfvvnneksnefdsaiiqsvqgdsnl
    vtkkeeiyplynvssl
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2vduE (E:)
    vqegqkidlpkkryyrqrahsnpfsdhqleypvspqdmdwsklypyyknaengqmtkkvt
    iadigcgfgglmidlspafpedlilgmeirvqvtnyvedriialrnntaskhgfqninvl
    rgnamkflpnffekgqlskmffcfpdphfkqrkhkariitntllseyayvlkeggvvyti
    tdvkdlhewmvkhleehplferlskeweendecvkimrnateegkkverkkgdkfvacft
    rlptpailhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2vduE (E:)
    qleypvspqdmdwsklypyyknaengqmtkkvtiadigcgfgglmidlspafpedlilgm
    eirvqvtnyvedriialrnntaskhgfqninvlrgnamkflpnffekgqlskmffcfpdp
    riitntllseyayvlkeggvvytitdvkdlhewmvkhleehplferlskeweendecvki
    mrnatdkfvacftrlptpail
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vduF (F:)
    vqegqkidlpkkryyrqrahsnpfsdhqleypvspqdmdwsklypyyknaengqmtkkvt
    iadigcgfgglmidlspafpedlilgmeirvqvtnyvedriialrnntaskhgfqninvl
    rgnamkflpnffekgqlskmffcfpdphfkqrkhkariitntllseyayvlkeggvvyti
    tdvkdlhewmvkhleehplferlskeweendecvkimrnateegkkverkkgdkfvacft
    rlptpailhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2vduF (F:)
    qleypvspqdmdwsklypyyknaengqmtkkvtiadigcgfgglmidlspafpedlilgm
    eirvqvtnyvedriialrnntaskhgfqninvlrgnamkflpnffekgqlskmffcfpdp
    riitntllseyayvlkeggvvytitdvkdlhewmvkhleehplferlskeweendecvki
    mrnatdkfvacftrlptpail