PDB entry 2vdh

View 2vdh on RCSB PDB site
Description: crystal structure of chlamydomonas reinhardtii rubisco with a large-subunit c172s mutation
Class: lyase
Keywords: vicinal cysteines, co2/o2 specificity, photosynthesis, transit peptide, photorespiration, metal-binding, hydroxylation, oxidoreductase, methylation, chloroplast, calvin cycle, monooxygenase, lyase, rubisco, plastid, magnesium, acetylation, carbon dioxide fixation
Deposited on 2007-10-09, released 2008-11-04
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.172
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'B':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'C':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'D':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'E':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'F':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'G':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'H':
  Compound: ribulose bisphosphate carboxylase large chain
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00877 (Start-474)
    • conflict (45)
    • engineered mutation (171)
• Chain 'I':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdhi_
• Chain 'J':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdhj_
• Chain 'K':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdhk_
• Chain 'L':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdhl_
• Chain 'M':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdhm_
• Chain 'N':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdhn_
• Chain 'O':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdho_
• Chain 'P':
  Compound: ribulose bisphosphate carboxylase small chain 1
  Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P00873 (0-139)
  Domains in SCOPe 2.01: d2vdhp_
• Heterogens: MG, CAP, EDO, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhI (I:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv
  

  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhJ (J:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv
  

  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhK (K:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv
  

  
  
• Chain 'L':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhL (L:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv
  

  
  
• Chain 'M':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhM (M:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv
  

  
  
• Chain 'N':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhN (N:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv
  

  
  
• Chain 'O':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhO (O:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv
  

  
  
• Chain 'P':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2vdhP (P:)
  mmvwtpvnnkmfetfsylppltdeqiaaqvdyivangwipclefaeadkayvsnesairf
  gsvsclyydnrywtmwklpmfgcrdpmqvlreivactkafpdayvrlvafdnqkqvqimg
  flvqrpktardfqpankrsv