SCOPe 2.08: Structural Classification of Proteins

PDB entry 2vdh

View 2vdh on RCSB PDB site
Description: crystal structure of chlamydomonas reinhardtii rubisco with a large-subunit c172s mutation
Class: lyase
Keywords: vicinal cysteines, co2/o2 specificity, photosynthesis, transit peptide, photorespiration, metal-binding, hydroxylation, oxidoreductase, methylation, chloroplast, calvin cycle, monooxygenase, lyase, rubisco, plastid, magnesium, acetylation, carbon dioxide fixation
Deposited on 2007-10-09, released 2008-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.172
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdha1, d2vdha2
Chain 'B':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdhb1, d2vdhb2
Chain 'C':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdhc1, d2vdhc2
Chain 'D':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdhd1, d2vdhd2
Chain 'E':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdhe1, d2vdhe2
Chain 'F':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdhf1, d2vdhf2
Chain 'G':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdhg1, d2vdhg2
Chain 'H':
Compound: ribulose bisphosphate carboxylase large chain
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00877 (Start-474)
  - conflict (45)
  - engineered mutation (171)
Domains in SCOPe 2.08: d2vdhh1, d2vdhh2
Chain 'I':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdhi_
Chain 'J':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdhj_
Chain 'K':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdhk_
Chain 'L':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdhl_
Chain 'M':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdhm_
Chain 'N':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdhn_
Chain 'O':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdho_
Chain 'P':
Compound: ribulose bisphosphate carboxylase small chain 1
Species: CHLAMYDOMONAS REINHARDTII [TaxId:3055]
Database cross-references and differences (RAF-indexed):
- Uniprot P00873 (0-139)
Domains in SCOPe 2.08: d2vdhp_
Heterogens: MG, CAP, EDO, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2vdhA (A:)
mvpqtetkagagfkagvkdyrltyytpdyvvrdtdilaafrmtpqpgvppeecgaavaae
sstgtwttvwtdgltsldrykgrcydiepvpgednqyiayvaypidlfeegsvtnmftsi
vgnvfgfkalralrledlrippayvktfvgpphgiqverdklnkygrgllgstikpklgl
saknygravyeclrggldftkddenvnsqpfmrwrdrflfvaeaiykaqaetgevkghyl
natagtceemmkravcakelgvpiimhdyltggftantslaiycrdnglllhihramhav
idrqrnhgihfrvlakalrmsggdhlhsgtvvgklegerevtlgfvdlmrddyvekdrsr
giyftqdwcsmpgvmpvasggihvwhmpalveifgddaclqfgggtlghpwgnapgaaan
rvaleactqarnegrdlareggdvirsackwspelaaacevwkeikfefdtidkl