PDB entry 2vde

View 2vde on RCSB PDB site
Description: crystal structure of the open state of tolc outer membrane component of mutlidrug efflux pumps
Deposited on 2007-10-04, released 2008-04-22
The last revision was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: outer membrane protein tolc
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02930 (Start-449)
      • engineered mutation (190)
      • engineered mutation (383)
      • engineered mutation (388)
    • PDB 2VDE (450-End)
  • Chain 'B':
    Compound: outer membrane protein tolc
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02930 (Start-449)
      • engineered mutation (190)
      • engineered mutation (383)
      • engineered mutation (388)
    • PDB 2VDE (450-End)
  • Chain 'C':
    Compound: outer membrane protein tolc
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02930 (Start-449)
      • engineered mutation (190)
      • engineered mutation (383)
      • engineered mutation (388)
    • PDB 2VDE (450-End)
  • Heterogens: CL

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vdeA (A:)
    mrkllpiliglslsgfsslsqaenlmqvyqqarlsnpelrksaadrdaafekinearspl
    lpqlglgadytysngyrdanginsnatsaslqltqsifdmskwraltlqekaagiqdvty
    qtdqqtlilntatayfnvlnaidvlsytqaqkeaiyrqldqttqrfnvglvaitdvqnar
    aqydtvlaneltarnnldnaveqlrqitgnyypelaalnvenfktdkpqpvnallkeaek
    rnlsllqarlsqdlareqirqaqdghlptldltastgisdtsysgsktrgaagtqyddsn
    mgqnkvglsfslpiyqggmvnsqvkqaqynfvgaseqlesahrsvvqtvrssfnninasi
    ssinaykqavvsaqssldameagfsvgtetivdvldatttlynakqelanarynylinql
    niksalgtlneqdllalnnalskpvstnpelehhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2vdeA (A:)
    enlmqvyqqarlsnpelrksaadrdaafekinearspllpqlglgadytysngyrdangi
    nsnatsaslqltqsifdmskwraltlqekaagiqdvtyqtdqqtlilntatayfnvlnai
    dvlsytqaqkeaiyrqldqttqrfnvglvaitdvqnaraqydtvlaneltarnnldnave
    qlrqitgnyypelaalnvenfktdkpqpvnallkeaekrnlsllqarlsqdlareqirqa
    qdghlptldltastgisdtsysgsktrgaagtqyddsnmgqnkvglsfslpiyqggmvns
    qvkqaqynfvgaseqlesahrsvvqtvrssfnninasissinaykqavvsaqssldamea
    gfsvgtetivdvldatttlynakqelanarynylinqlniksalgtlneqdllalnnals
    kpvstnpel
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vdeB (B:)
    mrkllpiliglslsgfsslsqaenlmqvyqqarlsnpelrksaadrdaafekinearspl
    lpqlglgadytysngyrdanginsnatsaslqltqsifdmskwraltlqekaagiqdvty
    qtdqqtlilntatayfnvlnaidvlsytqaqkeaiyrqldqttqrfnvglvaitdvqnar
    aqydtvlaneltarnnldnaveqlrqitgnyypelaalnvenfktdkpqpvnallkeaek
    rnlsllqarlsqdlareqirqaqdghlptldltastgisdtsysgsktrgaagtqyddsn
    mgqnkvglsfslpiyqggmvnsqvkqaqynfvgaseqlesahrsvvqtvrssfnninasi
    ssinaykqavvsaqssldameagfsvgtetivdvldatttlynakqelanarynylinql
    niksalgtlneqdllalnnalskpvstnpelehhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2vdeB (B:)
    enlmqvyqqarlsnpelrksaadrdaafekinearspllpqlglgadytysngyrdangi
    nsnatsaslqltqsifdmskwraltlqekaagiqdvtyqtdqqtlilntatayfnvlnai
    dvlsytqaqkeaiyrqldqttqrfnvglvaitdvqnaraqydtvlaneltarnnldnave
    qlrqitgnyypelaalnvenfktdkpqpvnallkeaekrnlsllqarlsqdlareqirqa
    qdghlptldltastgisdtsysgsktrgaagtqyddsnmgqnkvglsfslpiyqggmvns
    qvkqaqynfvgaseqlesahrsvvqtvrssfnninasissinaykqavvsaqssldamea
    gfsvgtetivdvldatttlynakqelanarynylinqlniksalgtlneqdllalnnals
    kpvstnpel
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vdeC (C:)
    mrkllpiliglslsgfsslsqaenlmqvyqqarlsnpelrksaadrdaafekinearspl
    lpqlglgadytysngyrdanginsnatsaslqltqsifdmskwraltlqekaagiqdvty
    qtdqqtlilntatayfnvlnaidvlsytqaqkeaiyrqldqttqrfnvglvaitdvqnar
    aqydtvlaneltarnnldnaveqlrqitgnyypelaalnvenfktdkpqpvnallkeaek
    rnlsllqarlsqdlareqirqaqdghlptldltastgisdtsysgsktrgaagtqyddsn
    mgqnkvglsfslpiyqggmvnsqvkqaqynfvgaseqlesahrsvvqtvrssfnninasi
    ssinaykqavvsaqssldameagfsvgtetivdvldatttlynakqelanarynylinql
    niksalgtlneqdllalnnalskpvstnpelehhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >2vdeC (C:)
    enlmqvyqqarlsnpelrksaadrdaafekinearspllpqlglgadytysngyrdangi
    nsnatsaslqltqsifdmskwraltlqekaagiqdvtyqtdqqtlilntatayfnvlnai
    dvlsytqaqkeaiyrqldqttqrfnvglvaitdvqnaraqydtvlaneltarnnldnave
    qlrqitgnyypelaalnvenfktdkpqpvnallkeaekrnlsllqarlsqdlareqirqa
    qdghlptldltastgisdtsysgsktrgaagtqyddsnmgqnkvglsfslpiyqggmvns
    qvkqaqynfvgaseqlesahrsvvqtvrssfnninasissinaykqavvsaqssldamea
    gfsvgtetivdvldatttlynakqelanarynylinqlniksalgtlneqdllalnnals
    kpvstnpel