PDB entry 2vcg

View 2vcg on RCSB PDB site
Description: crystal structure of a hdac-like protein hdah from bordetella sp. with the bound inhibitor st-17
Deposited on 2007-09-24, released 2008-01-08
The last revision was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Histone deacetylase-like amidohydrolase
    Species: ALCALIGENES SP. [TaxId:512]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VCG (Start-6)
      • conflict (256)
    • Uniprot Q70I53 (7-End)
  • Chain 'B':
    Compound: Histone deacetylase-like amidohydrolase
    Species: ALCALIGENES SP. [TaxId:512]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VCG
      • conflict (256)
    • Uniprot Q70I53 (7-374)
  • Chain 'C':
    Compound: Histone deacetylase-like amidohydrolase
    Species: ALCALIGENES SP. [TaxId:512]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VCG
      • conflict (256)
    • Uniprot Q70I53 (7-374)
  • Chain 'D':
    Compound: Histone deacetylase-like amidohydrolase
    Species: ALCALIGENES SP. [TaxId:512]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VCG (0-6)
      • conflict (256)
    • Uniprot Q70I53 (7-374)
  • Heterogens: ZN, K, S17, GOL, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vcgA (A:)
mhhhhhhaigyvwntlygwvdtgtgslaaanltarmqpishhlahpdtkrrfhelvcasg
qiehltpiaavaatdadilrahsaahlenmkrvsnlptggdtgdgitmmgnggleiarls
aggaveltrrvatgelsagyalvnppghhaphnaamgfcifnntsvaagyaravlgmerv
aildwdvhhgngtqdiwwndpsvltislhqhlcfppdsgystergagnghgyninvplpp
gsgnaaylhamdqvvlpalrayrpqliivgsgfdasmldplarmmvtadgfrqmarrtid
caadicdgrivfvqeggysphylpfcglavieeltgvrslpdpyheflagmggntlldae
raaieeivplladir

    Sequence, based on observed residues (ATOM records):
    >2vcgA (A:)
haigyvwntlygwvdtgtgslaaanltarmqpishhlahpdtkrrfhelvcasgqiehlt
piaavaatdadilrahsaahlenmkrvsnlptggdtgdgitmmgnggleiarlsaggave
ltrrvatgelsagyalvnppghhaphnaamgfcifnntsvaagyaravlgmervaildwd
vhhgngtqdiwwndpsvltislhqhlcfppdsgystergagnghgyninvplppgsgnaa
ylhamdqvvlpalrayrpqliivgsgfdasmldplarmmvtadgfrqmarrtidcaadic
dgrivfvqeggysphylpfcglavieeltgvrslpdpyheflagmggntlldaeraaiee
ivplladi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vcgB (B:)
mhhhhhhaigyvwntlygwvdtgtgslaaanltarmqpishhlahpdtkrrfhelvcasg
qiehltpiaavaatdadilrahsaahlenmkrvsnlptggdtgdgitmmgnggleiarls
aggaveltrrvatgelsagyalvnppghhaphnaamgfcifnntsvaagyaravlgmerv
aildwdvhhgngtqdiwwndpsvltislhqhlcfppdsgystergagnghgyninvplpp
gsgnaaylhamdqvvlpalrayrpqliivgsgfdasmldplarmmvtadgfrqmarrtid
caadicdgrivfvqeggysphylpfcglavieeltgvrslpdpyheflagmggntlldae
raaieeivplladir

    Sequence, based on observed residues (ATOM records):
    >2vcgB (B:)
aigyvwntlygwvdtgtgslaaanltarmqpishhlahpdtkrrfhelvcasgqiehltp
iaavaatdadilrahsaahlenmkrvsnlptggdtgdgitmmgnggleiarlsaggavel
trrvatgelsagyalvnppghhaphnaamgfcifnntsvaagyaravlgmervaildwdv
hhgngtqdiwwndpsvltislhqhlcfppdsgystergagnghgyninvplppgsgnaay
lhamdqvvlpalrayrpqliivgsgfdasmldplarmmvtadgfrqmarrtidcaadicd
grivfvqeggysphylpfcglavieeltgvrslpdpyheflagmggntlldaeraaieei
vplladir

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vcgC (C:)
mhhhhhhaigyvwntlygwvdtgtgslaaanltarmqpishhlahpdtkrrfhelvcasg
qiehltpiaavaatdadilrahsaahlenmkrvsnlptggdtgdgitmmgnggleiarls
aggaveltrrvatgelsagyalvnppghhaphnaamgfcifnntsvaagyaravlgmerv
aildwdvhhgngtqdiwwndpsvltislhqhlcfppdsgystergagnghgyninvplpp
gsgnaaylhamdqvvlpalrayrpqliivgsgfdasmldplarmmvtadgfrqmarrtid
caadicdgrivfvqeggysphylpfcglavieeltgvrslpdpyheflagmggntlldae
raaieeivplladir

    Sequence, based on observed residues (ATOM records):
    >2vcgC (C:)
aigyvwntlygwvdtgtgslaaanltarmqpishhlahpdtkrrfhelvcasgqiehltp
iaavaatdadilrahsaahlenmkrvsnlptggdtgdgitmmgnggleiarlsaggavel
trrvatgelsagyalvnppghhaphnaamgfcifnntsvaagyaravlgmervaildwdv
hhgngtqdiwwndpsvltislhqhlcfppdsgystergagnghgyninvplppgsgnaay
lhamdqvvlpalrayrpqliivgsgfdasmldplarmmvtadgfrqmarrtidcaadicd
grivfvqeggysphylpfcglavieeltgvrslpdpyheflagmggntlldaeraaieei
vplladir

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >2vcgD (D:)
mhhhhhhaigyvwntlygwvdtgtgslaaanltarmqpishhlahpdtkrrfhelvcasg
qiehltpiaavaatdadilrahsaahlenmkrvsnlptggdtgdgitmmgnggleiarls
aggaveltrrvatgelsagyalvnppghhaphnaamgfcifnntsvaagyaravlgmerv
aildwdvhhgngtqdiwwndpsvltislhqhlcfppdsgystergagnghgyninvplpp
gsgnaaylhamdqvvlpalrayrpqliivgsgfdasmldplarmmvtadgfrqmarrtid
caadicdgrivfvqeggysphylpfcglavieeltgvrslpdpyheflagmggntlldae
raaieeivplladir