PDB entry 2vc9

View 2vc9 on RCSB PDB site
Description: family 89 glycoside hydrolase from clostridium perfringens in complex with 2-acetamido-1,2-dideoxynojirmycin
Deposited on 2007-09-19, released 2008-03-18
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.36 Å
R-factor: 0.205
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-n-acetylglucosaminidase
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NOK, GOL, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vc9A (A:)
    gveitegvtvtakgntegntadlaidgdlstywessndykwievdlggiyelskieifnk
    deavykyniyasedgenfnkiayknndnvsdsngnmhtidnvragkiridvvqnsnsdrv
    niaeinvfgkntgeslpevkkiatsnfsetpwateyekfnsdsayanektlneiknlvgr
    vigrefkdkfifeirdqlngndvfevsdsgdgkvlikgnngvslasgfnyylknycnvsy
    npimgsnlkmpetmpsvgervvidtpyehryalnfctysytmsfwdwdqyeefldwcamn
    gvnlvldiigqeevlrrtlnefgysdeevkefisgpayfawfymqnmtgfggplpndwfe
    qraelgrkmhdrmqsfginpvlqgysgmvprdfkeknqeaqtisqggwcgfdrpdmlkty
    vnegeadyfqkvadvfyekqkevfgdvtnfygvdpfheggntgdldngkiyeiiqnkmie
    hdndavwviqnwqgnpsnnklegltkkdqamvldlfsevspdwnrleerdlpwiwnmlhn
    fggrmgmdaapeklateipkalansehmvgigitpeaintnplayellfdmawtrdqinf
    rtwtedyierrygktnkeileawniildtaykkrndyyqgaaesiinarpgfgiksastw
    ghskivydksefekaieifaknydefkdsdaflydfadilkqllansaqeyyevmcnayn
    ngngekfkfvsgkfleliklqervlstrpeflignwiedartmlkdsddwtkdlfefnar
    alvttwgsrnnadggglkdysnrqwsgltedyyyarwekwinglqaeldggakapnidwf
    kmeydwvnkksdtdklypteasnenlgelakiamesysvtnmdkilgenes
    

    Sequence, based on observed residues (ATOM records):
    >2vc9A (A:)
    gveitegvtvtakgntegntadlaidgdlstywessndykwievdlggiyelskieifnk
    deavykyniyasedgenfnkiayknndnvsdsngnmhtidnvragkiridvvqnsnsdrv
    niaeinvfgkntgeslpevkkiatsnfsetpwateyekfnsdsayanektlneiknlvgr
    vigrefkdkfifeirdqlngndvfevsdsgdgkvlikgnngvslasgfnyylknycnvsy
    npimgsnlkmpetmpsvgervvidtpyehryalnfctysytmsfwdwdqyeefldwcamn
    gvnlvldiigqeevlrrtlnefgysdeevkefisgpayfawfymqnmtgfggplpndwfe
    qraelgrkmhdrmqsfginpvlqgysgmvprdfkeknqeaqtisqggwcgfdrpdmlkty
    vnegeadyfqkvadvfyekqkevfgdvtnfygvdpfheggntgdldngkiyeiiqnkmie
    hdndavwviqnwqgnpsnnklegltkkdqamvldlfsevspdwnrleerdlpwiwnmlhn
    fggrmgmdaapeklateipkalansehmvgigitpeaintnplayellfdmawtrdqinf
    rtwtedyierrygktnkeileawniildtaykkrndyyqgaaesiinarpgfgiksastw
    ghskivydksefekaieifaknydefkdsdaflydfadilkqllansaqeyyevmcnayn
    ngngekfkfvsgkfleliklqervlstrpeflignwiedartmlkdsddwtkdlfefnar
    alvttwgsrnnadggglkdysnrqwsgltedyyyarwekwinglqaeldggakapnidwf
    kmeydwvnkksdtdklypteasnenlgelakiamesysvtnmdk