PDB entry 2vbi

View 2vbi on RCSB PDB site
Description: holostructure of pyruvate decarboxylase from acetobacter pasteurianus
Deposited on 2007-09-14, released 2008-04-08
The last revision was dated 2018-01-17, with a file datestamp of 2018-01-12.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Chain 'B':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Chain 'C':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Chain 'D':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Chain 'E':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Chain 'F':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Chain 'G':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Chain 'H':
    Compound: pyruvate decarboxylase
    Species: Acetobacter pasteurianus [TaxId:438]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8L388 (398-End)
      • conflict (24)
      • conflict (206-210)
      • conflict (296-297)
      • conflict (396)
    • PDB 2VBI
  • Heterogens: MG, TPP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vbiA (A:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiA (A:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vbiB (B:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiB (B:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vbiC (C:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiC (C:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vbiD (D:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiD (D:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2vbiE (E:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiE (E:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vbiF (F:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiF (F:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2vbiG (G:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiG (G:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2vbiH (H:)
mtytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegy
arsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktd
ysyqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgp
vssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcav
timaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpk
gpnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeag
ltndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafg
namgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyi
knwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdml
vqwgrkvastnarkttlalehhhhhh

    Sequence, based on observed residues (ATOM records):
    >2vbiH (H:)
tytvgmylaerlvqiglkhhfavagdynlvlldqlllnkdmkqiyccnelncgfsaegya
rsngaaaavvtfsvgaisamnalggayaenlpvilisgapnsndqgtghilhhtigktdy
syqlemarqvtcaaesitdahsapakidhvirtalrerkpayldiacniasepcvrpgpv
ssllsepeidhtslkaavdatvalleksaspvmllgsklraanalaatetladklqcavt
imaaakgffpedhagfrglywgevsnpgvqelvetsdallciapvfndystvgwsawpkg
pnvilaepdrvtvdgraydgftlraflqalaekaparpasaqkssvptcsltatsdeagl
tndeivrhinalltsnttlvaetgdswfnamrmtlprgarvelemqwghigwsvpsafgn
amgsqdrqhvvmvgdgsfqltaqevaqmvryelpviiflinnrgyvieiaihdgpynyik
nwdyaglmevfnageghglglkattpkelteaiarakantrgptliecqidrtdctdmlv
qwgrkvastnarkt