PDB entry 2vbc

View 2vbc on RCSB PDB site
Description: crystal structure of the ns3 protease-helicase from dengue virus
Deposited on 2007-09-10, released 2007-10-30
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: 0.206
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dengue 4 ns3 full-length protein
    Species: DENGUE VIRUS TYPE 4 [TaxId:11070]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2TN89 (Start-617)
      • conflict (249)
  • Chain 'B':
    Compound: partial polyprotein for ns2a and ns2b, type 4 prototype dv4 h241
    Species: DENGUE VIRUS TYPE 4 [TaxId:11070]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q91EQ2 (4-End)
    • PDB 2VBC
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vbcA (A:)
    sgalwdvpspaatqkatlsegvyrimqrglfgktqvgvgihmegvfhtmwhvtrgsvich
    etgrlepswadvrndmisygggwrlgdkwdkeedvqvlaiepgknpkhvqtkpglfktlt
    geigavtldfkpgtsgspiinkkgkviglygngvvtksgdyvsaitqaerigepdyevde
    difrkkrltimdlhpgagktkrilpsivrealkrrlrtlilaptrvvaaemeealrglpi
    ryqtpavksdhtgreivdlmchatfttrllsstrvpnynlivmdeahftdpcsvaargyi
    strvemgeaaaifmtatppgstdpfpqsnspiediereiperswntgfdwitdyqgktvw
    fvpsikagndianclrksgkrviqlsrktfdteypktkltdwdfvvttdisemganfrag
    rvidprrclkpviltdgpervilagpipvtpasaaqrrgrigrnpaqeddqyvfsgdplk
    ndedhahwteakmlldniytpegiiptlfgperektqaidgefrlrgeqrktfvelmrrg
    dlpvwlsykvasagisykdrewcftgernnqileenmeveiwtregekkklrpkwldarv
    yadpmalkdfkefasgrk
    

    Sequence, based on observed residues (ATOM records):
    >2vbcA (A:)
    segvyrimqrglfgktqvgvgihmegvfhtmwhvtrgsvichetgrlepswadvrndmis
    ygggwrlgdkwdkeedvqvlaiepgknpkhvqtkpglfktltgeigavtldfkpgtsgsp
    iinkkgkviglygngvvtksgdyvsaitqaerigepdyevdedifrkkrltimdlhpgag
    ktkrilpsivrealkrrlrtlilaptrvvaaemeealrglpiryqtpavksdhtgreivd
    lmchatfttrllsstrvpnynlivmdeahftdpcsvaargyistrvemgeaaaifmtatp
    pgstdpfpqsnspiediereiperswntgfdwitdyqgktvwfvpsikagndianclrks
    gkrviqlsrktfdteypktkltdwdfvvttdisemganfragrvidprrclkpviltdgp
    ervilagpipvtpasaaqrrgrigrnpaqeddqyvfsgdplkndedhahwteakmlldni
    ytpegiiptlfgperektqaidgefrlrgeqrktfvelmrrgdlpvwlsykvasagisyk
    drewcftgernnqileenmeveiwtregekkklrpkwldarvyadpmalkdfkefasgrk
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vbcB (B:)
    gsamadlslekaanvqwdemadggggsgggg
    

    Sequence, based on observed residues (ATOM records):
    >2vbcB (B:)
    adlslekaanvqwde