PDB entry 2vak

View 2vak on RCSB PDB site
Description: crystal structure of the avian reovirus inner capsid protein sigmaa
Deposited on 2007-09-01, released 2008-09-09
The last revision was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 2.34 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (0-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'B':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (Start-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'C':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (Start-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'D':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (Start-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'E':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (Start-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'F':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (Start-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'G':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK
    • Uniprot Q9E6F8 (7-422)
  • Chain 'H':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (Start-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'I':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (0-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'J':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (Start-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'K':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (0-6)
    • Uniprot Q9E6F8 (7-422)
  • Chain 'L':
    Compound: sigma a
    Species: AVIAN ORTHOREOVIRUS [TaxId:38170]
    Database cross-references and differences (RAF-indexed):
    • PDB 2VAK (0-6)
    • Uniprot Q9E6F8 (7-422)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2vakA (A:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakA (A:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyq
esmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdll
nyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfv
dmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqal
dswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqg
vinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnli
qadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2vakB (B:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakB (B:)
sefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqe
smlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdlln
yprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvd
mcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqald
swtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgv
inqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliq
adlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2vakC (C:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakC (C:)
tmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqesmlhs
atvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdllnyprwa
nrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvdmcarl
tqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqaldswtlf
yttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgvinqaq
nrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliqadlgq
ikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2vakD (D:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakD (D:)
sefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqe
smlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdlln
yprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvd
mcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqald
swtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgv
inqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliq
adlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2vakE (E:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakE (E:)
sefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqe
smlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdlln
yprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvd
mcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqald
swtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgv
inqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliq
adlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2vakF (F:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakF (F:)
tmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqesmlhs
atvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdllnyprwa
nrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvdmcarl
tqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqaldswtlf
yttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgvinqaq
nrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliqadlgq
ikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'G':
    Sequence, based on SEQRES records:
    >2vakG (G:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakG (G:)
maraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqesmlhsa
tvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdllnyprwan
rrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvdmcarlt
qscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqaldswtlfy
ttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgvinqaqn
rpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliqadlgqi
kaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'H':
    Sequence, based on SEQRES records:
    >2vakH (H:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakH (H:)
sefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqe
smlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdlln
yprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvd
mcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqald
swtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgv
inqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliq
adlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2vakI (I:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakI (I:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyq
esmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdll
nyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfv
dmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqal
dswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqg
vinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnli
qadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2vakJ (J:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakJ (J:)
tmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyqesmlhs
atvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdllnyprwa
nrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfvdmcarl
tqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqaldswtlf
yttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqgvinqaq
nrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnliqadlgq
ikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'K':
    Sequence, based on SEQRES records:
    >2vakK (K:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakK (K:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyq
esmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdll
nyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfv
dmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqal
dswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqg
vinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnli
qadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta

  • Chain 'L':
    Sequence, based on SEQRES records:
    >2vakL (L:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqrflssmtpltapgivs
tpeapypgslmyqesmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaa
pyqpasaqwsdllnyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrl
adwfmsqygnnfvdmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntis
gfyfssktrgqaldswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaiv
macrqppvfanqgvinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgq
altqeandfsnliqadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlat
fta

    Sequence, based on observed residues (ATOM records):
    >2vakL (L:)
isefgstmaraiydffstpfgnrglatnrtqlssllsssnspwqivstpeapypgslmyq
esmlhsatvpgvlgsrdawrtfnvfglswtdeglsglvaaqdpppaapyqpasaqwsdll
nyprwanrrrelqskyplllrstllsamragpvlyvetwpnmisgrladwfmsqygnnfv
dmcarltqscsnmpvepdgnydqqmralislwllsyigvvnqtntisgfyfssktrgqal
dswtlfyttntnrvqitqrhfayvcarspdwnvdkswiaaanltaivmacrqppvfanqg
vinqaqnrpgfsmnggtpvhelnllttaqecirqwvmaglvsaakgqaltqeandfsnli
qadlgqikaqddalynqqpgyarrikpfvngdwtpgmtaqalavlatfta