PDB entry 2v9g

View 2v9g on RCSB PDB site
Description: l-rhamnulose-1-phosphate aldolase from escherichia coli (mutant q6y- l84w-e192a)
Class: lyase
Keywords: zinc, lyase, aldolase, class II, cytoplasm, protein engineering, 2-ketose degradation, cleavage of l-rhamnulose-1-phosphate to dihydroxyacetoneph bacterial l-rhamnose metabolism, metal-binding, oligomerization, interface design, protein-protein interface, rare sugar, aggregation, zinc enzyme, fibrillation, surface mutation, rhamnose metabolism
Deposited on 2007-08-23, released 2008-01-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rhamnulose-1-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32169 (Start-273)
      • engineered mutation (5)
      • engineered mutation (83)
      • engineered mutation (191)
    Domains in SCOPe 2.08: d2v9ga_
  • Chain 'B':
    Compound: rhamnulose-1-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32169 (0-273)
      • engineered mutation (5)
      • engineered mutation (83)
      • engineered mutation (191)
    Domains in SCOPe 2.08: d2v9gb_
  • Chain 'C':
    Compound: rhamnulose-1-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32169 (0-273)
      • engineered mutation (5)
      • engineered mutation (83)
      • engineered mutation (191)
    Domains in SCOPe 2.08: d2v9gc_
  • Chain 'D':
    Compound: rhamnulose-1-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32169 (0-273)
      • engineered mutation (5)
      • engineered mutation (83)
      • engineered mutation (191)
    Domains in SCOPe 2.08: d2v9gd_
  • Heterogens: TLA, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2v9gA (A:)
    mqnityswfvqgmikattdawlkgwdernggnltlrlddadiapyhdnfhqqpryiplsq
    pmpllantpfivtgsgkffrnvqwdpaanlgivkvdsdgagyhilwgltneavptselpa
    hflshcerikatngkdrvimhchatnlialtyvlendtavftrqlwegsteclvvfpdgv
    gilpwmvpgtdaigqataqemqkhslvlwpfhgvfgsgptldetfglidtaeksaqvlvk
    vysmggmkqtisreelialgkrfgvtplasalal
    

    Sequence, based on observed residues (ATOM records): (download)
    >2v9gA (A:)
    qnityswfvqgmikattdawlkgwdernggnltlrlddadiapyhdnfhqqpryiplsqp
    mpllantpfivtgsgkffrnvqwdpaanlgivkvdsdgagyhilwgltneavptselpah
    flshcerikatngkdrvimhchatnlialtyvlendtavftrqlwegsteclvvfpdgvg
    ilpwmvpgtdaigqataqemqkhslvlwpfhgvfgsgptldetfglidtaeksaqvlvkv
    ysmggmkqtisreelialgkrfgvtplasalal
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2v9gB (B:)
    mqnityswfvqgmikattdawlkgwdernggnltlrlddadiapyhdnfhqqpryiplsq
    pmpllantpfivtgsgkffrnvqwdpaanlgivkvdsdgagyhilwgltneavptselpa
    hflshcerikatngkdrvimhchatnlialtyvlendtavftrqlwegsteclvvfpdgv
    gilpwmvpgtdaigqataqemqkhslvlwpfhgvfgsgptldetfglidtaeksaqvlvk
    vysmggmkqtisreelialgkrfgvtplasalal
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2v9gC (C:)
    mqnityswfvqgmikattdawlkgwdernggnltlrlddadiapyhdnfhqqpryiplsq
    pmpllantpfivtgsgkffrnvqwdpaanlgivkvdsdgagyhilwgltneavptselpa
    hflshcerikatngkdrvimhchatnlialtyvlendtavftrqlwegsteclvvfpdgv
    gilpwmvpgtdaigqataqemqkhslvlwpfhgvfgsgptldetfglidtaeksaqvlvk
    vysmggmkqtisreelialgkrfgvtplasalal
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2v9gD (D:)
    mqnityswfvqgmikattdawlkgwdernggnltlrlddadiapyhdnfhqqpryiplsq
    pmpllantpfivtgsgkffrnvqwdpaanlgivkvdsdgagyhilwgltneavptselpa
    hflshcerikatngkdrvimhchatnlialtyvlendtavftrqlwegsteclvvfpdgv
    gilpwmvpgtdaigqataqemqkhslvlwpfhgvfgsgptldetfglidtaeksaqvlvk
    vysmggmkqtisreelialgkrfgvtplasalal