PDB entry 2v87
View 2v87 on RCSB PDB site
Description: Crystal structure of RAG2-PHD finger in complex with H3R2me2sK4me3 peptide
Class: protein binding
Keywords: v(d)j recombination, covalent modifications, rag, histone, nucleus, nuclease, hydrolase, phd finger, DNA-binding, recombinase, endonuclease, symmetric dimethylated arginine, protein binding, trimethyl lysine, DNA recombination
Deposited on
2007-08-02, released
2007-12-11
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-05-08, with a file datestamp of
2019-05-03.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: vdj recombination-activating protein 2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 2V87 (Start-7)
- Uniprot P21784 (8-81)
Domains in SCOPe 2.08: d2v87a2, d2v87a3 - Chain 'B':
Compound: vdj recombination-activating protein 2
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- PDB 2V87 (Start-7)
- Uniprot P21784 (8-81)
Domains in SCOPe 2.08: d2v87b2, d2v87b3 - Chain 'D':
Compound: Histone H3.2
Species: Mus musculus, synthetic [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Histone H3.2
Species: Mus musculus, synthetic [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2v87A (A:)
gplgspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleert
lihlsegsnkyycnehvqiara
Sequence, based on observed residues (ATOM records): (download)
>2v87A (A:)
spefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleertlihl
segsnkyycnehvqiara
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2v87B (B:)
gplgspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleert
lihlsegsnkyycnehvqiara
Sequence, based on observed residues (ATOM records): (download)
>2v87B (B:)
gspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleertlih
lsegsnkyycnehvqiara
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.