PDB entry 2v83

View 2v83 on RCSB PDB site
Description: Crystal structure of RAG2-PHD finger in complex with H3K4me3 peptide
Class: protein binding
Keywords: v(d)j recombination, covalent modifications, rag, histone, nucleus, nuclease, hydrolase, phd finger, DNA-binding, recombinase, endonuclease, trimetyl lysine, DNA recombination, protein binding
Deposited on 2007-08-02, released 2007-12-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-02-06, with a file datestamp of 2019-02-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vdj recombination-activating protein 2
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2v83a_
  • Chain 'B':
    Compound: vdj recombination-activating protein 2
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21784 (8-81)
      • expression tag (3-7)
    Domains in SCOPe 2.08: d2v83b2, d2v83b3
  • Chain 'C':
    Compound: vdj recombination-activating protein 2
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21784 (8-End)
      • expression tag (3-7)
    Domains in SCOPe 2.08: d2v83c2, d2v83c3
  • Chain 'D':
    Compound: histone h3
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: histone h3
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2v83A (A:)
gplgspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleert
lihlsegsnkyycnehvqiara

    Sequence, based on observed residues (ATOM records): (download) 
    >2v83A (A:)
gywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleertlihlsegs
nkyycnehvqia

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2v83B (B:)
gplgspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleert
lihlsegsnkyycnehvqiara

    Sequence, based on observed residues (ATOM records): (download) 
    >2v83B (B:)
gspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleertlih
lsegsnkyycnehvqiara

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2v83C (C:)
gplgspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleert
lihlsegsnkyycnehvqiara

    Sequence, based on observed residues (ATOM records): (download) 
    >2v83C (C:)
gspefgywitccptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleertlih
lsnkyycnehvq

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.