PDB entry 2v6m

View 2v6m on RCSB PDB site
Description: crystal structure of lactate dehydrogenase from thermus thermophilus hb8 (apo form)
Class: oxidoreductase
Keywords: oxidoreductase, phosphorylation, nad, lactate, cytoplasm, glycolysis, thermophile
Deposited on 2007-07-19, released 2007-09-25
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.196
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-lactate dehydrogenase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v6ma1, d2v6ma2
  • Chain 'B':
    Compound: l-lactate dehydrogenase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v6mb1, d2v6mb2
  • Chain 'C':
    Compound: l-lactate dehydrogenase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v6mc1, d2v6mc2
  • Chain 'D':
    Compound: l-lactate dehydrogenase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2v6md1, d2v6md2
  • Heterogens: MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2v6mA (A:)
mkvgivgsgmvgsatayalallgvarevvlvdldrklaqahaedilhatpfahpvwvrag
sygdlegaravvlaagvaqrpgetrlqlldrnaqvfaqvvprvleaapeavllvatnpvd
vmtqvayrlsglppgrvvgsgtildtarfrallaeylrvapqsvhayvlgehgdsevlvw
ssaqvggvpllefaeargralspedraridegvrraayriiegkgatyygigaglarlvr
ailtdekgvytvsaftpevegvlevslslprilgaggvegtvypslspeerealrrsaei
lkeaafalgf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2v6mB (B:)
mkvgivgsgmvgsatayalallgvarevvlvdldrklaqahaedilhatpfahpvwvrag
sygdlegaravvlaagvaqrpgetrlqlldrnaqvfaqvvprvleaapeavllvatnpvd
vmtqvayrlsglppgrvvgsgtildtarfrallaeylrvapqsvhayvlgehgdsevlvw
ssaqvggvpllefaeargralspedraridegvrraayriiegkgatyygigaglarlvr
ailtdekgvytvsaftpevegvlevslslprilgaggvegtvypslspeerealrrsaei
lkeaafalgf

    Sequence, based on observed residues (ATOM records): (download) 
    >2v6mB (B:)
mkvgivgsgmvgsatayalallgvarevvlvdldrklaqahaedilhatpfahpvwvrag
sygdlegaravvlaagvrlqlldrnaqvfaqvvprvleaapeavllvatnpvdvmtqvay
rlsglppgrvvgsgtildtarfrallaeylrvapqsvhayvlgehgdsevlvwssaqvgg
vpllefaeargralspedraridegvrraayriiegkgatyygigaglarlvrailtdek
gvytvsaftpevegvlevslslprilgaggvegtvypslspeerealrrsaeilkeaafa
lgf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2v6mC (C:)
mkvgivgsgmvgsatayalallgvarevvlvdldrklaqahaedilhatpfahpvwvrag
sygdlegaravvlaagvaqrpgetrlqlldrnaqvfaqvvprvleaapeavllvatnpvd
vmtqvayrlsglppgrvvgsgtildtarfrallaeylrvapqsvhayvlgehgdsevlvw
ssaqvggvpllefaeargralspedraridegvrraayriiegkgatyygigaglarlvr
ailtdekgvytvsaftpevegvlevslslprilgaggvegtvypslspeerealrrsaei
lkeaafalgf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2v6mD (D:)
mkvgivgsgmvgsatayalallgvarevvlvdldrklaqahaedilhatpfahpvwvrag
sygdlegaravvlaagvaqrpgetrlqlldrnaqvfaqvvprvleaapeavllvatnpvd
vmtqvayrlsglppgrvvgsgtildtarfrallaeylrvapqsvhayvlgehgdsevlvw
ssaqvggvpllefaeargralspedraridegvrraayriiegkgatyygigaglarlvr
ailtdekgvytvsaftpevegvlevslslprilgaggvegtvypslspeerealrrsaei
lkeaafalgf

    Sequence, based on observed residues (ATOM records): (download) 
    >2v6mD (D:)
mkvgivgsgmvgsatayalallgvarevvlvdldrklaqahaedilhatpfahpvwvrag
sygdlegaravvlaagvaqqlldrnaqvfaqvvprvleaapeavllvatnpvdvmtqvay
rlsglppgrvvgsgtildtarfrallaeylrvapqsvhayvlgehgdsevlvwssaqvgg
vpllefaeargralspedraridegvrraayriiegkgatyygigaglarlvrailtdek
gvytvsaftpevegvlevslslprilgaggvegtvypslspeerealrrsaeilkeaafa
lgf