PDB entry 2v5d

View 2v5d on RCSB PDB site
Description: structure of a family 84 glycoside hydrolase and a family 32 carbohydrate-binding module in tandem from clostridium perfringens.
Deposited on 2008-10-02, released 2009-01-27
The last revision was dated 2009-04-14, with a file datestamp of 2009-04-10.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.32479
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2v5dA (A:)
    vgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltann
    ieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgd
    gtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenkl
    ntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdag
    eedfnhlitkaeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplit
    vpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrn
    mavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswn
    mdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwn
    klsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasld
    mivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqealsfdltlinprtvk
    itasseetsgenapasfasdgdmntfwhskwsspahegphhltleldnvyeinkvkyapr
    qdskngritgykvsvsldgenftevktgtlednaaikfiefdsvdakyvrldvtdsvsdq
    angrgkfataaevnvhg
    

    Sequence, based on observed residues (ATOM records):
    >2v5dA (A:)
    vlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsendpn
    sttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqtfk
    qlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapkdd
    pyhrekwesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhlitkaesly
    dmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplitvpteydtgamvsngq
    praytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrnmavwwnypvtdyfkg
    klalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydkawnraid
    mlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskedasalieel
    ygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlnedteayes
    akeiaqnklntalssfavisekvaqsfiqealsfdltlinprtvkitasseetsgenapa
    sfasdgdmntfwhskwsspahegphhltleldnvyeinkvkyaprqdskngritgykvsv
    sldgenftevktgtlednaaikfiefdsvdakyvrldvtdsvsdqangrgkfataaevnv
    hg