PDB entry 2v5c

View 2v5c on RCSB PDB site
Description: family 84 glycoside hydrolase from clostridium perfringens, 2.1 angstrom structure
Class: hydrolase
Keywords: glycosidase, clostridium perfringens, gh84, gh84c, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module
Deposited on 2008-10-02, released 2009-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-04-14, with a file datestamp of 2009-04-10.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.198
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2v5ca1, d2v5ca2, d2v5ca3
  • Chain 'B':
    Compound: O-GlcNAcase nagJ
    Species: Clostridium perfringens [TaxId:1502]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2v5cb1, d2v5cb2, d2v5cb3
  • Heterogens: CA, CAC, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2v5cA (A:)
vgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltann
ieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgd
gtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenkl
ntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdag
eedfnhlitkaeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplit
vpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrn
mavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswn
mdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwn
klsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasld
mivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqealsfdltli

    Sequence, based on observed residues (ATOM records): (download) 
    >2v5cA (A:)
vlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsendpn
sttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqtfk
qlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapkdd
pyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhlitk
aeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplitvpteydtgam
vsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrnmavwwnypvt
dyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydkaw
nraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskedasa
lieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlnedt
eayesakeiaqnklntalssfavisekvaqsfiqealsfdltli

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2v5cB (B:)
vgpktgeenqvlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltann
ieinsendpnsttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgd
gtfygvqtfkqlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenkl
ntyiyapkddpyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdag
eedfnhlitkaeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplit
vpteydtgamvsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrn
mavwwnypvtdyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswn
mdnydydkawnraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwn
klsskedasalieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasld
mivaqlnedteayesakeiaqnklntalssfavisekvaqsfiqealsfdltli

    Sequence, based on observed residues (ATOM records): (download) 
    >2v5cB (B:)
vlvpnlnptpenlevvgdgfkitssinlvgeeeadenavnalrefltannieinsendpn
sttliigevdddipeldealngttaenlkeegyalvsndgkiaiegkdgdgtfygvqtfk
qlvkesnipevnitdyptvsargivegfygtpwthqdrldqikfygenklntyiyapkdd
pyhrekwrepypesemqrmqelinasaenkvdfvfgispgidirfdgdageedfnhlitk
aeslydmgvrsfaiywddiqdksaakhaqvlnrfneefvkakgdvkplitvpteydtgam
vsngqpraytrifaetvdpsievmwtgpgvvtneiplsdaqlisgiynrnmavwwnypvt
dyfkgklalgpmhgldkglnqyvdfftvnpmehaelskisihtaadyswnmdnydydkaw
nraidmlygdlaedmkvfanhstrmdnktwaksgredapelrakmdelwnklsskedasa
lieelygefarmeeacnnlkanlpevaleecsrqldelitlaqgdkasldmivaqlnedt
eayesakeiaqnklntalssfavisekvaqsfiqealsfdltli