SCOP: Structural Classification of Proteins and ASTRAL

Structural Classification of Proteins and ASTRAL release 1.75B (January 2013)

PDB entry 2v4j

View 2v4j on RCSB PDB site
Description: the crystal structure of desulfovibrio vulgaris dissimilatory sulfite reductase bound to dsrc provides novel insights into the mechanism of sulfate respiration
Class: oxidoreductase
Keywords: dissimilatory sulfite reductase, siroheme, oxidoreductase, sirohydrochlorin
Deposited on 2008-09-22, released 2008-09-30
The last revision prior to the SCOP 1.75B freeze date was dated 2010-07-14, with a file datestamp of 2010-07-09.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.1916
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: sulfite reductase, dissimilatory-type subunit alpha
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Domains in SCOP 1.75B: d2v4ja1, d2v4ja2, d2v4ja3
Chain 'B':
Compound: sulfite reductase, dissimilatory-type subunit beta
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Domains in SCOP 1.75B: d2v4jb1, d2v4jb2, d2v4jb3
Chain 'C':
Compound: sulfite reductase, dissimilatory-type subunit gamma
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Domains in SCOP 1.75B: d2v4jc1
Chain 'D':
Compound: sulfite reductase, dissimilatory-type subunit alpha
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Domains in SCOP 1.75B: d2v4jd1, d2v4jd2, d2v4jd3
Chain 'E':
Compound: sulfite reductase, dissimilatory-type subunit beta
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Domains in SCOP 1.75B: d2v4je1, d2v4je2, d2v4je3
Chain 'F':
Compound: sulfite reductase, dissimilatory-type subunit gamma
Species: DESULFOVIBRIO VULGARIS [TaxId:882]
Domains in SCOP 1.75B: d2v4jf_
Heterogens: SF4, SRM, SO3, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2v4jA (A:)
makhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsyde
gethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcd
iwdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgk
srcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtw
kddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidn
kecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeike
vvekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeev
pggwdrditeyrkrhlr

Sequence, based on observed residues (ATOM records): (download)

>2v4jA (A:)
akhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsydeg
ethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcdi
wdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgks
rcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtwk
ddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidnk
ecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeikev
vekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeevp
ggwdrditeyrkrhlr

Chain 'B':
Sequence, based on SEQRES records: (download)

>2v4jB (B:)
mafissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgd
kvytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlas
rkfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpa
pvrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptk
leigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfsk
vvvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshh
liddfrdpayytwrqstqfkf

Sequence, based on observed residues (ATOM records): (download)

>2v4jB (B:)
afissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgdk
vytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlasr
kfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpap
vrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptkl
eigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfskv
vvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshhl
iddfrdpayytwrqstqfkf

Chain 'C':
Sequence, based on SEQRES records: (download)

>2v4jC (C:)
maevtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkn
giapmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv

Sequence, based on observed residues (ATOM records): (download)

>2v4jC (C:)
evtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkngi
apmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv

Chain 'D':
Sequence, based on SEQRES records: (download)

>2v4jD (D:)
makhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsyde
gethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcd
iwdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgk
srcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtw
kddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidn
kecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeike
vvekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeev
pggwdrditeyrkrhlr

Sequence, based on observed residues (ATOM records): (download)

>2v4jD (D:)
akhatpkldqlesgpwpsfvsdikqeaayraanpkgldyqvpvdcpedllgvlelsydeg
ethwkhggivgvfgygggvigrycdqpekfpgvahfhtvrvaqpsgkyysadylrqlcdi
wdlrgsgltnmhgstgdivllgtqtpqleeiffelthnlntdlggsgsnlrtpesclgks
rcefacydsqaacyeltmeyqdelhrpafpykfkfkfdacpngcvasiarsdfsvigtwk
ddikidaeavkayvagefkpnagahsgrdwgkfdieaevvnrcpskcmkwdgsklsidnk
ecvrcmhcintmpralhigdergasilcgakapildgaqmgsllvpfvaaeepfdeikev
vekiwdwwmeegknrerlgetmkrlsfqkllevteiapvpqhvkeprtnpyiffkeeevp
ggwdrditeyrkrhlr

Chain 'E':
Sequence, based on SEQRES records: (download)

>2v4jE (E:)
mafissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgd
kvytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlas
rkfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpa
pvrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptk
leigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfsk
vvvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshh
liddfrdpayytwrqstqfkf

Sequence, based on observed residues (ATOM records): (download)

>2v4jE (E:)
afissgynpekpmanritdigprkfdeffppviaknfgswlyheilepgvlmhvaesgdk
vytvrvgaarlmsithiremcdiadkycgghlrfttrnnvefmvadeaslkalkedlasr
kfdggslkfpiggtgagvsnivhtqgwvhchtpatdasgpvkaimdevfedfqsmrlpap
vrislaccinmcgavhcsdigvvgihrkppmidhewtdqlceiplavascptaavrptkl
eigdkkvntiaiknercmycgncytmcpalpisdgegdgvvimvggkvsnrismpkfskv
vvayipnepprwpsltktikhiievysanaykyerlgewaerigwerffsltglefshhl
iddfrdpayytwrqstqfkf

Chain 'F':
Sequence, based on SEQRES records: (download)

>2v4jF (F:)
maevtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkn
giapmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv

Sequence, based on observed residues (ATOM records): (download)

>2v4jF (F:)
evtykgksfevdedgfllrfddwcpewveyvkesegisdispdhqkiidflqdyykkngi
apmvrilskntgfklkevyelfpsgpgkgackmaglpkptgcv

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