PDB entry 2uyl

View 2uyl on RCSB PDB site
Description: crystal structure of a monoclonal antibody directed against an antigenic determinant common to ogawa and inaba serotypes of vibrio cholerae o1
Class: immune system
Keywords: fab fragment, monoclonal antibody, immune system, immunoglobulin domain, immunoglobulin c region, anti-lps vibrio cholerae
Deposited on 2007-04-10, released 2008-05-13
The last revision prior to the SCOP 1.75 freeze date was dated 2008-05-13, with a file datestamp of 2008-05-09.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.21329
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • PDB 2UYL (0-End)
  • Chain 'B':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d2uylb1
  • Chain 'M':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • PDB 2UYL (0-End)
  • Chain 'N':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d2uyln1
  • Chain 'V':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • PDB 2UYL (0-End)
  • Chain 'W':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d2uylw1
  • Chain 'X':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • PDB 2UYL (0-End)
  • Chain 'Y':
    Compound: monoclonal antibody f-22-30
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d2uyly1

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2uylB (B:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvtvpsstwpsqtvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >2uylB (B:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsqtvtcnvahpasstkvdkkivprd

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >2uylN (N:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvtvpsstwpsqtvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >2uylN (N:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsqtvtcnvahpasstkvdkkivprd

  • Chain 'V':
    No sequence available.

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >2uylW (W:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvtvpsstwpsqtvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >2uylW (W:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsqtvtcnvahpasstkvdkkivprd

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >2uylY (Y:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvtvpsstwpsqtvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >2uylY (Y:)
qvqleqpgaelvkpgasvklsckasgytftsnwinwvkqrpgqglewighispgssstny
nekfkskatltvdtssstaymqlssltsddsavyycgreetvrasfgnwgqgtlvtvsaa
kttppsvyplapsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsqtvtcnvahpasstkvdkkivprd