SCOPe 2.08: Structural Classification of Proteins

PDB entry 2uxb

View 2uxb on RCSB PDB site
Description: Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
Class: ribosome
Keywords: ribonucleoprotein, 30s ribosomal subunit, frameshift suppressor tRNA, tRNA, mRNA, codon, a site, ribosome, decoding, metal-binding, messenger RNA, ribosomal protein, RNA-binding, paromomycin, anticodon, stem-loop, frameshift, zinc-finger, rRNA-binding, tRNA-binding, transfer RNA
Deposited on 2007-03-28, released 2007-07-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-03-06, with a file datestamp of 2019-03-01.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: 16S ribosomal RNA
Species: Thermus thermophilus [TaxId:300852]
Chain 'B':
Compound: ribosomal protein s2
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot P80371
Domains in SCOPe 2.08: d2uxbb1
Chain 'C':
Compound: ribosomal protein s3
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot P80372 (1-End)
Chain 'D':
Compound: ribosomal protein s4
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot P80373 (1-208)
Domains in SCOPe 2.08: d2uxbd1
Chain 'E':
Compound: ribosomal protein s5
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SHQ5
Domains in SCOPe 2.08: d2uxbe1
Chain 'F':
Compound: ribosomal protein s6
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SLP8 (0-100)
Domains in SCOPe 2.08: d2uxbf1
Chain 'G':
Compound: ribosomal protein s7
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot P17291 (1-155)
Domains in SCOPe 2.08: d2uxbg1
Chain 'H':
Compound: ribosomal protein s8
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SHQ2 (0-137)
Domains in SCOPe 2.08: d2uxbh1
Chain 'I':
Compound: ribosomal protein s9
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot P80374 (Start-127)
  - conflict (57)
Domains in SCOPe 2.08: d2uxbi1
Chain 'J':
Compound: ribosomal protein s10
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SHN7
Domains in SCOPe 2.08: d2uxbj1
Chain 'K':
Compound: ribosomal protein s11
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot P80376 (Start-128)
Domains in SCOPe 2.08: d2uxbk1
Chain 'L':
Compound: ribosomal protein s12
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SHN3 (4-End)
Domains in SCOPe 2.08: d2uxbl1
Chain 'M':
Compound: ribosomal protein s13
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot P80377 (1-125)
Domains in SCOPe 2.08: d2uxbm1
Chain 'N':
Compound: ribosomal protein s14
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SHQ1 (1-60)
Domains in SCOPe 2.08: d2uxbn1
Chain 'O':
Compound: ribosomal protein s15
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SJ76 (1-88)
Domains in SCOPe 2.08: d2uxbo1
Chain 'P':
Compound: ribosomal protein s16
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5SJH3 (0-End)
Domains in SCOPe 2.08: d2uxbp1
Chain 'Q':
Compound: ribosomal protein s17
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
  - conflict (95)
- Uniprot Q5SHP7 (1-104)
Domains in SCOPe 2.08: d2uxbq1
Chain 'R':
Compound: ribosomal protein s18
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SLQ0 (Start-87)
Domains in SCOPe 2.08: d2uxbr1
Chain 'S':
Compound: ribosomal protein s19
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SHP2 (1-End)
Domains in SCOPe 2.08: d2uxbs1
Chain 'T':
Compound: ribosomal protein s20
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
  - conflict (40)
- Uniprot P80380 (Start-105)
Domains in SCOPe 2.08: d2uxbt1
Chain 'U':
Compound: ribosomal protein thx
Species: Thermus thermophilus [TaxId:300852]
Database cross-references and differences (RAF-indexed):
- PDB 2UXB
- Uniprot Q5SIH3 (1-End)
Domains in SCOPe 2.08: d2uxbu1
Chain 'X':
Compound: a-site messenger RNA fragment gggu
Species: synthetic construct, synthetic [TaxId:32630]
Chain 'Y':
Compound: anticodon stem-loop of transfer RNA with anticodon accc
Species: synthetic construct, synthetic [TaxId:32630]
Heterogens: PAR, MG, K, ZN

PDB Chain Sequences:

Chain 'A':
No sequence available.

Chain 'B':
Sequence, based on SEQRES records: (download)

>2uxbB (B:)
mpveitvkelleagvhfgherkrwnpkfaryiyaerngihiidlqktmeelertfrfied
lamrggtilfvgtkkqaqdivrmeaeragmpyvnqrwlggmltnfktisqrvhrleelea
lfaspeieerpkkeqvrlkhelerlqkylsgfrllkrlpdaifvvdptkeaiavrearkl
fipvialadtdsdpdlvdyiipgnddairsiqlilsravdliiqarggvvepspsyalvq
eaeatetpegesevea