PDB entry 2ubp
View 2ubp on RCSB PDB site
Description: structure of native urease from bacillus pasteurii
Class: hydrolase
Keywords: urease, bacillus pasteurii, nickel, hydrolase
Deposited on
1998-11-04, released
1999-11-08
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.16
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein (urease gamma subunit)
Species: Sporosarcina pasteurii [TaxId:1474]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2ubpa_ - Chain 'B':
Compound: protein (urease beta subunit)
Species: Sporosarcina pasteurii [TaxId:1474]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2ubpb_ - Chain 'C':
Compound: protein (urease alpha subunit)
Species: Sporosarcina pasteurii [TaxId:1474]
Database cross-references and differences (RAF-indexed):
- Uniprot P41020 (0-569)
- variant (18)
- insertion (27)
- variant (28)
- variant (35-37)
- modified residue (219)
- variant (262)
- conflict (419)
Domains in SCOPe 2.08: d2ubpc1, d2ubpc2 - Heterogens: SO4, NI, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2ubpA (A:)
mhlnpaekeklqiflaselllrrkarglklnypeavaiitsfimegardgktvamlmeeg
khvltrddvmegvpemiddiqaeatfpdgtklvtvhnpis
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2ubpB (B:)
nyivpgeyrvaegeieinagrekttirvsntgdrpiqvgshihfvevnkellfdraegig
rrlnipsgtaarfepgeemeveltelggnrevfgisdltngsvdnkelilqrakelgykg
ve
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>2ubpC (C:)
mkinrqqyaesygptvgdevrladtdlwievekdyttygdevnfgggkvlregmgengty
trtenvldllltnalildytgiykadigvkdgyivgigkggnpdimdgvtpnmivgtate
viaaegkivtaggidthvhfinpdqvdvalangittlfgggtgpaegskattvtpgpwni
ekmlksteglpinvgilgkghgssiapimeqidagaaglkihedwgatpasidrsltvad
eadvqvaihsdtlneagfledtlraingrvihsfhvegaggghapdimamaghpnvlpss
tnptrpftvntidehldmlmvchhlkqnipedvafadsrirpetiaaedilhdlgiismm
stdalamgragemvlrtwqtadkmkkqrgplaeekngsdnfrlkryvskytinpaiaqgi
ahevgsieegkfadlvlwepkffgvkadrvikggiiayaqigdpsasiptpqpvmgrrmy
gtvgdlihdtnitfmskssiqqgvpaklglkrrigtvkncrnigkkdmkwndvttdidin
petyevkvdgevltcepvkelpmaqryflf