PDB entry 2rkz

View 2rkz on RCSB PDB site
Description: Crystal structure of the second and third fibronectin f1 modules in complex with a fragment of staphylococcus aureus fnbpa-1
Class: cell adhesion
Keywords: fibrronectin, 2F13F1, beta zipper, staphylococcus aureus, Acute phase, Alternative splicing, Cell adhesion, Extracellular matrix, Glycoprotein, Heparin-binding, Phosphorylation, Pyrrolidone carboxylic acid, Secreted, Sulfation, Cell wall, Peptidoglycan-anchor, Virulence
Deposited on 2007-10-18, released 2008-08-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-06-19, with a file datestamp of 2019-06-14.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fibronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: FN1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rkza1, d2rkza2
  • Chain 'B':
    Compound: Fibronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: FN1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rkzb1, d2rkzb2
  • Chain 'C':
    Compound: Fibronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: FN1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rkzc1, d2rkzc2
  • Chain 'D':
    Compound: Fibronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: FN1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rkzd1, d2rkzd2
  • Chain 'E':
    Compound: Fibronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: FN1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rkze1, d2rkze2
  • Chain 'F':
    Compound: Fibronectin
    Species: Homo sapiens [TaxId:9606]
    Gene: FN1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rkzf1, d2rkzf2
  • Chain 'M':
    Compound: peptide from Fibronectin-binding protein A
    Species: Staphylococcus aureus (strain NCTC 8325), synthetic [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: peptide from Fibronectin-binding protein A
    Species: Staphylococcus aureus (strain NCTC 8325), synthetic [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: peptide from Fibronectin-binding protein A
    Species: Staphylococcus aureus (strain NCTC 8325), synthetic [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: peptide from Fibronectin-binding protein A
    Species: Staphylococcus aureus (strain NCTC 8325), synthetic [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: peptide from Fibronectin-binding protein A
    Species: Staphylococcus aureus (strain NCTC 8325), synthetic [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: peptide from Fibronectin-binding protein A
    Species: Staphylococcus aureus (strain NCTC 8325), synthetic [TaxId:93061]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SIN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2rkzA (A:)
aeetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigd
twrrphetggymlecvclgngkgewtckpi

    Sequence, based on observed residues (ATOM records): (download) 
    >2rkzA (A:)
eetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigdt
wrrphetggymlecvclgngkgewtckpi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2rkzB (B:)
aeetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigd
twrrphetggymlecvclgngkgewtckpi

    Sequence, based on observed residues (ATOM records): (download) 
    >2rkzB (B:)
eetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigdt
wrrphetggymlecvclgngkgewtckpi

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2rkzC (C:)
aeetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigd
twrrphetggymlecvclgngkgewtckpi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2rkzD (D:)
aeetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigd
twrrphetggymlecvclgngkgewtckpi

    Sequence, based on observed residues (ATOM records): (download) 
    >2rkzD (D:)
aeetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigd
twrrphymlecvclgngkgewtckpi

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2rkzE (E:)
aeetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigd
twrrphetggymlecvclgngkgewtckpi

    Sequence, based on observed residues (ATOM records): (download) 
    >2rkzE (E:)
eetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigdt
wrrplecvclgngkgewtckp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2rkzF (F:)
aeetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigd
twrrphetggymlecvclgngkgewtckpi

    Sequence, based on observed residues (ATOM records): (download) 
    >2rkzF (F:)
eetcfdkytgntyrvgdtyerpkdsmiwdctcigagrgrisctianrcheggqsykigdt
wrrphetggymlecvclgngkgewtckpi

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.