PDB entry 2rkj

View 2rkj on RCSB PDB site
Description: cocrystal structure of a tyrosyl-trna synthetase splicing factor with a group i intron rna
Deposited on 2007-10-16, released 2008-01-08
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 4.5 Å
R-factor: N/A
AEROSPACI score: 0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: RNA (238-mer)
    Species: Staphylococcus phage Twort [TaxId:55510]
    Gene: orf142-I2
  • Chain 'D':
    Compound: RNA (5'-r(p*gp*cp*up*u)-3')
  • Chain 'E':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: RNA (238-mer)
    Species: Staphylococcus phage Twort [TaxId:55510]
    Gene: orf142-I2
  • Chain 'H':
    Compound: RNA (5'-r(p*gp*cp*up*u)-3')
  • Chain 'I':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: RNA (238-mer)
    Species: Staphylococcus phage Twort [TaxId:55510]
    Gene: orf142-I2
  • Chain 'L':
    Compound: RNA (5'-r(p*gp*cp*up*u)-3')
  • Chain 'M':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Tyrosyl-tRNA synthetase
    Species: Neurospora crassa [TaxId:5141]
    Gene: cyt-18
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: RNA (238-mer)
    Species: Staphylococcus phage Twort [TaxId:55510]
    Gene: orf142-I2
  • Chain 'P':
    Compound: RNA (5'-r(p*gp*cp*up*u)-3')

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2rkjA (A:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjA (A:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2rkjB (B:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjB (B:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records:
    >2rkjE (E:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjE (E:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'F':
    Sequence, based on SEQRES records:
    >2rkjF (F:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjF (F:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records:
    >2rkjI (I:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjI (I:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'J':
    Sequence, based on SEQRES records:
    >2rkjJ (J:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjJ (J:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records:
    >2rkjM (M:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjM (M:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'N':
    Sequence, based on SEQRES records:
    >2rkjN (N:)
mlrrefgpkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelm
rtrrigayvgidptapslhvghllplmplfwmylegykaftliggstakigdptgrlksr
dhlsssdatmnmtkihyqlkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlev
lrrvghalrigpmlsrdtvknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggs
dqygniisglevvkaaresepdpqerkyvtpktaldecvgftvplltdssgakfgksagn
aiwldpyqtsvfdfygyfvrrsdqevenllklftfmpiseitktmeehikdpskrvaqht
larevvtlvhgkqeasaaedqhrmmytgqmti

    Sequence, based on observed residues (ATOM records):
    >2rkjN (N:)
pkytakineaeenwqaraeaikkgkkqntwdlfeergyvkdtagtkehiaelmrtrriga
yvgidptapslhvghllplmplfwmylegykaftliggstakigdptgdatmnmtkihyq
lkklwenvdtqmrargyeadwarkrgivnnnhwwnkqpmlevlrrvghalrigpmlsrdt
vknkmtqgdgvsfaeftypimqgwdwfelfyqqgvqmqiggsdqygniisglevvkaare
sepdpqerkyvtpktaldecvgftvplltdssgakfgksagnaiwldpyqtsvfdfygyf
vrrsdqevenllklftfmpiseitktmeehikdpskrvaqhtlarevvtlvhgkqeasaa
edqhrmm

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.