PDB entry 2ric

View 2ric on RCSB PDB site
Description: Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with L-glycero-D-manno-heptopyranosyl-(1-3)-L-glycero-D-manno-heptopyranose
Class: sugar binding protein
Keywords: surfactant protein; carbohydrate recognition; domain trimeric, sugar binding protein
Deposited on 2007-10-10, released 2008-01-15
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-09-29, with a file datestamp of 2009-09-25.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.205
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35247 (7-159)
      • expression tag (5-6)
    Domains in SCOPe 2.03: d2rica1, d2rica2
  • Chain 'B':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2ricb1, d2ricb2
  • Chain 'C':
    Compound: Pulmonary surfactant-associated protein D
    Species: Homo sapiens [TaxId:9606]
    Gene: SFTPD, PSPD, SFTP4
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35247 (7-159)
      • expression tag (2-6)
    Domains in SCOPe 2.03: d2ricc1, d2ricc2
  • Heterogens: CA, GMH, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ricA (A:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >2ricA (A:)
gsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqll
ctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapg
epnddggsedcveiftngkwndracgekrlvvcef

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ricB (B:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >2ricB (B:)
vaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpfteaqllctq
aggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnwapgepn
ddggsedcveiftngkwndracgekrlvvcef

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ricC (C:)
amadigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpft
eaqllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvys
nwapgepnddggsedcveiftngkwndracgekrlvvcef

    Sequence, based on observed residues (ATOM records): (download) 
    >2ricC (C:)
adigsdvaslrqqvealqgqvqhlqaafsqykkvelfpngqsvgekifktagfvkpftea
qllctqaggqlasprsaaenaalqqlvvakneaaflsmtdsktegkftyptgeslvysnw
apgepnddggsedcveiftngkwndracgekrlvvcef