PDB entry 2rgk

View 2rgk on RCSB PDB site
Description: Functional annotation of Escherichia coli yihS-encoded protein
Class: isomerase
Keywords: N-acyl-D-glucosamine 2-epimerase protein family, Isomerase
Deposited on 2007-10-03, released 2008-08-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.18
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized sugar isomerase yihS
    Species: Escherichia coli [TaxId:562]
    Gene: yihS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rgka_
  • Chain 'B':
    Compound: Uncharacterized sugar isomerase yihS
    Species: Escherichia coli [TaxId:562]
    Gene: yihS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rgkb_
  • Chain 'C':
    Compound: Uncharacterized sugar isomerase yihS
    Species: Escherichia coli [TaxId:562]
    Gene: yihS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rgkc_
  • Chain 'D':
    Compound: Uncharacterized sugar isomerase yihS
    Species: Escherichia coli [TaxId:562]
    Gene: yihS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rgkd_
  • Chain 'E':
    Compound: Uncharacterized sugar isomerase yihS
    Species: Escherichia coli [TaxId:562]
    Gene: yihS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rgke_
  • Chain 'F':
    Compound: Uncharacterized sugar isomerase yihS
    Species: Escherichia coli [TaxId:562]
    Gene: yihS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rgkf_
  • Heterogens: EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2rgkA (A:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttkvwdgkqdiyhllhclvipriplapgmapavaaglldinaklehhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2rgkA (A:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttgkqdiyhllhclvipriplapgmapavaaglldinak

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2rgkB (B:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttkvwdgkqdiyhllhclvipriplapgmapavaaglldinaklehhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2rgkB (B:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttgkqdiyhllhclvipriplapgmapavaaglldinak

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2rgkC (C:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttkvwdgkqdiyhllhclvipriplapgmapavaaglldinaklehhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2rgkC (C:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttgkqdiyhllhclvipriplapgmapavaaglldinak

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2rgkD (D:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttkvwdgkqdiyhllhclvipriplapgmapavaaglldinaklehhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2rgkD (D:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttgkqdiyhllhclvipriplapgmapavaaglldinak

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2rgkE (E:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttkvwdgkqdiyhllhclvipriplapgmapavaaglldinaklehhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2rgkE (E:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttgkqdiyhllhclvipriplapgmapavaaglldinak

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2rgkF (F:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttkvwdgkqdiyhllhclvipriplapgmapavaaglldinaklehhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2rgkF (F:)
mkwfntlshnrwleqetdrifdfgknsvvptgfgwlgnkgqikeemgthlwitarmlhvy
svaaamgrpgayslvdhgikamngalrdkkyggwyacvndegvvdaskqgyqhffallga
asavttghpearklldytieiiekyfwseeeqmcleswdeafskteeyrggnanmhavea
flivydvthdkkwldrairvasviihdvarnnhyrvnehfdtqwnplpdynkdnpahrfr
afggtpghwiewgrlmlhihaalearceqppawlledakglfnatvrdawapdgadgivy
tvdwegkpvvrervrwpiveamgtayalytvtgdrqyetwyqtwweycikylmdyengsw
wqeldadnkvttgkqdiyhllhclvipriplapgmapavaaglldinak