PDB entry 2rft

View 2rft on RCSB PDB site
Description: Crystal structure of influenza B virus hemagglutinin in complex with LSTa receptor analog
Class: viral protein
Keywords: Influenza, viral protein, receptor specificity, Envelope protein, Fusion protein, Hemagglutinin, Membrane, Transmembrane, Virion, Glycoprotein, Lipoprotein, Palmitate
Deposited on 2007-10-01, released 2008-02-05
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.282
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Influenza B hemagglutinin (HA)
    Species: Influenza B virus (STRAIN B/HONG KONG/8/73) [TaxId:11531]
    Gene: Hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2rfta_
  • Chain 'B':
    Compound: Influenza B hemagglutinin (HA)
    Species: Influenza B virus (STRAIN B/HONG KONG/8/73) [TaxId:11531]
    Gene: Hemagglutinin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2rftb_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2rftA (A:)
drictgitssnsphvvktatqgevnvtgvipltttptkshfanlkgtqtrgklcpnclnc
tdldvalgrpkcmgtipsakasilhevkpvtsgcfpimhdrtkirqlpnllrgyenirls
arnvtnaetapggpyivgtsgscpnvtngngffatmawavpknktatnpltvevpyictk
gedqitvwgfhsddetqmvklygdskpqkftssangvtthyvsqiggfpnqaedeglpqs
grivvdymvqkpgktgtiayqrgvllpqkvwcasgrskvikgslpligeadclhekyggl
nkskpyytgehakaigncpiwvktplklangtkyrppakllker

    Sequence, based on observed residues (ATOM records): (download) 
    >2rftA (A:)
drictgitssnsphvvktatqgevnvtgvipltttptkshfanlkgtqtrgklcpnclnc
tdldvalgrpkcmgtipsakasilhevkpvtsgcfpimhdrtkirqlpnllrgyenirls
arnvtnaetapggpyivgtsgscpnvtngngffatmawavpknktatnpltvevpyictk
gedqitvwgfhsddetqmvklygdskpqkftssangvtthyvsqiggfpnqaedeglpqs
grivvdymvqkpgktgtiayqrgvllpqkvwcasgrskvikgslpligeadclhekyggl
nkskpyytgehakaigncpiwvktplklangtkyrppakllk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2rftB (B:)
gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
knlqrlsgamdelhneileldekvddlradtissqielavllsnegiinsedehllaler
klkkmlgpsavdigngcfetkhkcnqtcldriaagtfnagefslptfdslnitaas

    Sequence, based on observed residues (ATOM records): (download) 
    >2rftB (B:)
gffgaiagfleggwegmiagwhgytshgahgvavaadlkstqeainkitknlnslselev
knlqrlsgamdelhneileldekvddlradtissqielavllsnegiinsedehllaler
klkkmlgpsavdigngcfetkhkcnqtcldriaagtfnagefslptfds