PDB entry 2rfj

View 2rfj on RCSB PDB site
Description: Crystal structure of the bromo domain 1 in human bromodomain containing protein, testis specific (BRDT)
Class: transcription regulator
Keywords: BRDT, bromodomain containing protein testis specific, Structural Genomics Consortium, SGC, Nucleus, Transcription, Transcription regulation, TRANSCRIPTION REGULATOR
Deposited on 2007-09-30, released 2007-10-23
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-04-11, with a file datestamp of 2012-04-06.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.194
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Bromodomain testis-specific protein
    Species: Homo sapiens [TaxId:9606]
    Gene: BRDT
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58F21
      • expression tag (1)
      • variant (43)
    Domains in SCOPe 2.06: d2rfja1, d2rfja2
  • Chain 'B':
    Compound: Bromodomain testis-specific protein
    Species: Homo sapiens [TaxId:9606]
    Gene: BRDT
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q58F21 (2-End)
      • expression tag (1)
      • variant (43)
    Domains in SCOPe 2.06: d2rfjb1, d2rfjb2
  • Chain 'C':
    Compound: Bromodomain testis-specific protein
    Species: Homo sapiens [TaxId:9606]
    Gene: BRDT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2rfjc_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2rfjA (A:)
smntkkngrltnqlqylqkvvlkdlwkhsfswpfqrpvdavklqlpdyytiiknpmdlnt
ikkrlenkyyakaseciedfntmfsncylynkpgddivlmaqaleklfmqklsqmpqee

    Sequence, based on observed residues (ATOM records): (download) 
    >2rfjA (A:)
mrltnqlqylqkvvlkdlwkhsfswpfqrpvdklqlpdyytiiknpmdlntikkrlenky
yakaseciedfntmfsncylynkpgddivlmaqaleklfmqklsqmpq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2rfjB (B:)
smntkkngrltnqlqylqkvvlkdlwkhsfswpfqrpvdavklqlpdyytiiknpmdlnt
ikkrlenkyyakaseciedfntmfsncylynkpgddivlmaqaleklfmqklsqmpqee

    Sequence, based on observed residues (ATOM records): (download) 
    >2rfjB (B:)
mntnqlqylqkvvlkdlwkhsfswpfqrpvklqlpdyytiiknpmdlntikkrlenkyya
kaseciedfntmfsncylynkpgddivlmaqaleklfmqklsqmpq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2rfjC (C:)
smntkkngrltnqlqylqkvvlkdlwkhsfswpfqrpvdavklqlpdyytiiknpmdlnt
ikkrlenkyyakaseciedfntmfsncylynkpgddivlmaqaleklfmqklsqmpqee

    Sequence, based on observed residues (ATOM records): (download) 
    >2rfjC (C:)
nqlqylqkvvlkdlwkhsfswpfqrpvklqlpdyytiiknpmdlntikkrlenkyyakas
eciedfntmfsncylynkpgddivlmaqaleklfmqklsqm