PDB entry 2rf4

View 2rf4 on RCSB PDB site
Description: Crystal structure of the RNA Polymerase I subcomplex A14/43
Class: transferase
Keywords: Transferase DNA/RNA, DNA-binding, Phosphorylation, RNA Polymerase I, Pol I, PolI, RPolI, Nuclear Protein, Nucleolar Protein, Transcription, Transferase, DDRP, Rpb4/7, Ribosome biogenesis, DNA-directed RNA polymerase, Nucleus
Deposited on 2007-09-28, released 2008-01-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase I subunit RPA4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: RPA43, RRN12
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rf4a1, d2rf4a2
  • Chain 'B':
    Compound: DNA-directed RNA polymerase I subunit RPA4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: RPA43, RRN12
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rf4b_
  • Chain 'C':
    Compound: DNA-directed RNA polymerase I subunit RPA4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: RPA43, RRN12
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rf4c1, d2rf4c2
  • Chain 'D':
    Compound: DNA-directed RNA polymerase I subunit RPA4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: RPA43, RRN12
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rf4d_
  • Chain 'E':
    Compound: DNA-directed RNA polymerase I subunit RPA4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: RPA43, RRN12
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rf4e1, d2rf4e2
  • Chain 'F':
    Compound: DNA-directed RNA polymerase I subunit RPA4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: RPA43, RRN12
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2rf4f_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2rf4A (A:)
msqvkranenretarfikkhkkqvtnpidekngtsncivrvpialyvslapmylenplqg
vmkqhlnplvmkynnkvggvvlgyeglkildadplskedtseklikitpdtpfgftwchv
nlyvwqpqvgdvlegyifiqsashigllihdafnasikknnipvdwtfvhndgnrslghw
vdsngepidgklrftvrnvhttgrvvsvdgtlis

    Sequence, based on observed residues (ATOM records): (download) 
    >2rf4A (A:)
kqvtnpidekngtsncivrvpialyvslapmylenplqgvmkqhlnplvmkynnkvggvv
lgyeglkildadppfgftwchvnlyvwqpqvgdvlegyifiqsashigllihdafnasik
knnipvdwtfvhndgnslghwvdsngepidgklrftvrnvhttgrvvsvdgtli

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2rf4B (B:)
mmkgsrrtgnntattlntpvvihatqlpqhvstdevlqflesfidekeniididtnlsss
isqlkriqrdfkglppaqdfsaapiqv

    Sequence, based on observed residues (ATOM records): (download) 
    >2rf4B (B:)
lntpvvihatqlpqhvstdevlqflesfidekeniididtnlsssisqlkriqrdfkglp
p

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2rf4C (C:)
msqvkranenretarfikkhkkqvtnpidekngtsncivrvpialyvslapmylenplqg
vmkqhlnplvmkynnkvggvvlgyeglkildadplskedtseklikitpdtpfgftwchv
nlyvwqpqvgdvlegyifiqsashigllihdafnasikknnipvdwtfvhndgnrslghw
vdsngepidgklrftvrnvhttgrvvsvdgtlis

    Sequence, based on observed residues (ATOM records): (download) 
    >2rf4C (C:)
kkqvtnpidekngtsncivrvpialyvslapmylenplqgvmkqhlnplvmkynnkvggv
vlgyeglkildadpgftwchvnlyvwqpqvgdvlegyifiqsashigllihdafnasikk
nnipvdwtfvhndgslghwvdsngepidgklrftvrnvhttgrvvsvdgtli

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2rf4D (D:)
mmkgsrrtgnntattlntpvvihatqlpqhvstdevlqflesfidekeniididtnlsss
isqlkriqrdfkglppaqdfsaapiqv

    Sequence, based on observed residues (ATOM records): (download) 
    >2rf4D (D:)
ntpvvihatqlpqhvstdevlqflesfidekeniididtnlsssisqlkriqrdfkglpp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2rf4E (E:)
msqvkranenretarfikkhkkqvtnpidekngtsncivrvpialyvslapmylenplqg
vmkqhlnplvmkynnkvggvvlgyeglkildadplskedtseklikitpdtpfgftwchv
nlyvwqpqvgdvlegyifiqsashigllihdafnasikknnipvdwtfvhndgnrslghw
vdsngepidgklrftvrnvhttgrvvsvdgtlis

    Sequence, based on observed residues (ATOM records): (download) 
    >2rf4E (E:)
kkqvtnpidekngtsncivrvpialyvslapmylenplqgvmkqhlnplvmkynnkvggv
vlgyeglkildadplgftwchvnlyvwqpqvgdvlegyifiqsashigllihdafnasik
knnipvdwtfvhndgnrslghwvdsngepidgklrftvrnvhttgrvvsvdgtli

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2rf4F (F:)
mmkgsrrtgnntattlntpvvihatqlpqhvstdevlqflesfidekeniididtnlsss
isqlkriqrdfkglppaqdfsaapiqv

    Sequence, based on observed residues (ATOM records): (download) 
    >2rf4F (F:)
ntpvvihatqlpqhvstdevlqflesfidekeniididtnlsssisqlkriqrdfkglpp