PDB entry 2rdd

View 2rdd on RCSB PDB site
Description: X-ray crystal structure of AcrB in complex with a novel transmembrane helix.
Deposited on 2007-09-22, released 2007-12-11
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.279
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acriflavine resistance protein B
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: UPF0092 membrane protein yajC
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: AIC

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2rddA (A:)
mpnffidrpifawviaiiimlagglailklpvaqyptiappavtisasypgadaktvqdt
vtqvieqnmngidnlmymssnsdstgtvqitltfesgtdadiaqvqvqnklqlampllpq
evqqqgvsvekssssflmvvgvintdgtmtqedisdyvaanmkdaisrtsgvgdvqlfgs
qyamriwmnpnelnkfqltpvdvitaikaqnaqvaagqlggtppvkgqqlnasiiaqtrl
tsteefgkillkvnqdgsrvllrdvakielggenydiiaefngqpasglgiklatganal
dtaaairaelakmepffpsglkivypydttpfvkisihevvktlveaiilvflvmylflq
nfratliptiavpvvllgtfavlaafgfsintltmfgmvlaigllvddaivvvenvervm
aeeglppkeatrksmgqiqgalvgiamvlsavfvpmaffggstgaiyrqfsitivsamal
svlvaliltpalcatmlkpiakgdhgegkkgffgwfnrmfeksthhytdsvggilrstgr
ylvlyliivvgmaylfvrlpssflpdedqgvfmtmvqlpagatqertqkvlnevthyylt
keknnvesvfavngfgfagrgqntgiafvslkdwadrpgeenkveaitmratrafsqikd
amvfafnlpaivelgtatgfdfelidqaglghekltqarnqllaeaakhpdmltsvrpng
ledtpqfkididqekaqalgvsindinttlgaawggsyvndfidrgrvkkvyvmseakyr
mlpddigdwyvraadgqmvpfsafsssrweygsprlerynglpsmeilgqaapgkstgea
melmeqlasklptgvgydwtgmsyqerlsgnqapslyaislivvflclaalyeswsipfs
vmlvvplgvigallaatfrgltndvyfqvgllttiglsaknailivefakdlmdkegkgl
ieatldavrmrlrpilmtslafilgvmplvistgagsgaqnavgtgvmggmvtatvlaif
fvpvffvvvrrrfsrknediehshtvdhh

    Sequence, based on observed residues (ATOM records):
    >2rddA (A:)
mpnffidrpifawviaiiimlagglailklpvaqyptiappavtisasypgadaktvqdt
vtqvieqnmngidnlmymssnsdstgtvqitltfesgtdadiaqvqvqnklqlampllpq
evqqqgvsvekssssflmvvgvintdgtmtqedisdyvaanmkdaisrtsgvgdvqlfgs
qyamriwmnpnelnkfqltpvdvitaikaqnaqvaagqlggtppvkgqqlnasiiaqtrl
tsteefgkillkvnqdgsrvllrdvakielggenydiiaefngqpasglgiklaanaldt
aaairaelakmepffpsglkivypydttpfvkisihevvktlveaiilvflvmylflqnf
ratliptiavpvvllgtfavlaafgfsintltmfgmvlaigllvddaivvvenvervmae
eglppkeatrksmgqiqgalvgiamvlsavfvpmaffggstgaiyrqfsitivsamalsv
lvaliltpalcatmlkpiakkgffgwfnrmfeksthhytdsvggilrstgrylvlyliiv
vgmaylfvrlpssflpdedqgvfmtmvqlpagatqertqkvlnevthyyltkeknnvesv
favngfgfagrgqntgiafvslkdwadrpgeenkveaitmratrafsqikdamvfafnlp
aivefdfelidqaglghekltqarnqllaeaakhpdmvrpngledtpqfkididqekaqa
lgvsindinttlgaawggsyvndfidrgrvkkvyvmseakyrmlpddigdwyvraadgqm
vpfsafsssrweygsprlerynglpsmeilgqaapgkstgeamelmeqlasklptgvgyd
wtgmsyqerlsgnqapslyaislivvflclaalyeswsipfsvmlvvplgvigallaatf
rgltndvyfqvgllttiglsaknailivefakdlmdkegkglieatldavrmrlrpilmt
slafilgvmplvistgagsgaqnavgtgvmggmvtatvlaiffvpvffvvvrrrfsrk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >2rddB (B:)
spmslilmlvvfglifyfmilrpqqkrtkehkklmds