PDB entry 2rd3

View 2rd3 on RCSB PDB site
Description: Crystal structure of TenA homologue (HP1287) from Helicobacter pylori
Class: hydrolase
Keywords: TenA, HP1287, Helicobacter pylori, Thiamin, Vitamin B1, thiaminase II, TRANSCRIPTION, HYDROLASE
Deposited on 2007-09-21, released 2008-09-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcriptional regulator
    Species: Helicobacter pylori
    Gene: HP1287
    Database cross-references and differences (RAF-indexed):
    • Uniprot O25874 (6-222)
      • expression tag (2-5)
      • see remark 999 (16)
      • see remark 999 (97)
      • see remark 999 (109)
      • see remark 999 (192)
      • see remark 999 (203)
    Domains in SCOPe 2.08: d2rd3a1, d2rd3a2
  • Chain 'D':
    Compound: Transcriptional regulator
    Species: Helicobacter pylori
    Gene: HP1287
    Database cross-references and differences (RAF-indexed):
    • Uniprot O25874 (6-222)
      • expression tag (5)
      • see remark 999 (16)
      • see remark 999 (97)
      • see remark 999 (109)
      • see remark 999 (192)
      • see remark 999 (203)
    Domains in SCOPe 2.08: d2rd3d1, d2rd3d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2rd3A (A:)
gidpftmqvsqylyqnaqsiwgdcishpfvqgigrgtlerdkfrfyiiqdylflleyakv
falgvvkacdeavmrefsnaiqdilnnemsihnhyirelqitqkelqnacptlanksyts
ymlaegfkgsikevaaavlscgwsylviaqnlsqipnalehafyghwikgysskefqacv
nwninlldsltlasskqeieklkeifittseyeylfwdmayqs

    Sequence, based on observed residues (ATOM records): (download) 
    >2rd3A (A:)
dpftmqvsqylyqnaqsiwgdcishpfvqgigrgtlerdkfrfyiiqdylflleyakvfa
lgvvkacdeavmrefsnaiqdilnnemsihnhyirelqitqkelqnacptlanksytsym
laegfkgsikevaaavlscgwsylviaqnlsqipnalehafyghwikgysskefqacvnw
ninlldsltlasskqeieklkeifittseyeylfwdmayqs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2rd3D (D:)
gidpftmqvsqylyqnaqsiwgdcishpfvqgigrgtlerdkfrfyiiqdylflleyakv
falgvvkacdeavmrefsnaiqdilnnemsihnhyirelqitqkelqnacptlanksyts
ymlaegfkgsikevaaavlscgwsylviaqnlsqipnalehafyghwikgysskefqacv
nwninlldsltlasskqeieklkeifittseyeylfwdmayqs

    Sequence, based on observed residues (ATOM records): (download) 
    >2rd3D (D:)
tmqvsqylyqnaqsiwgdcishpfvqgigrgtlerdkfrfyiiqdylflleyakvfalgv
vkacdeavmrefsnaiqdilnnemsihnhyirelqitqkelqnacptlanksytsymlae
gfkgsikevaaavlscgwsylviaqnlsqipnalehafyghwikgysskefqacvnwnin
lldsltlasskqeieklkeifittseyeylfwdmayqs