PDB entry 2r9q

View 2r9q on RCSB PDB site
Description: Crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from Agrobacterium tumefaciens
Deposited on 2007-09-13, released 2007-10-02
The last revision was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.19
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2'-deoxycytidine 5'-triphosphate deaminase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Gene: dcd, AGR_C_764, Atu0434
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 2'-deoxycytidine 5'-triphosphate deaminase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Gene: dcd, AGR_C_764, Atu0434
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 2'-deoxycytidine 5'-triphosphate deaminase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Gene: dcd, AGR_C_764, Atu0434
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 2'-deoxycytidine 5'-triphosphate deaminase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Gene: dcd, AGR_C_764, Atu0434
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: Synthetic peptide 1
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2R9Q (0-6)
  • Chain 'Y':
    Compound: Synthetic peptide 2
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2R9Q (0-8)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2r9qA (A:)
mtrttgtrttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmp
gpgtrvidklnrfslhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrld
iftrvmtdnaqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesev
lklhetetlvasenpnvtgggialsidlkgfgengligyrgkhhtavvdvdkkaqhdvld
fweplfargraelildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpg
fghaqaggtgsravlevrshevpfilehgqivgrlvyehmlekpeglygtglgsnyqaqg
lklskhfrae

    Sequence, based on observed residues (ATOM records):
    >2r9qA (A:)
rttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmpgpgtrvi
dklnrflhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrldiftrvmtd
naqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesevlklhetet
lvapnvtgialsidlkgfgengligyrgkhhtavvdvdkkaqhdvldfweplfargrael
ildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpgfghtgsravlevr
shevpfilehgqivgrlvyehmlekpe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2r9qB (B:)
mtrttgtrttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmp
gpgtrvidklnrfslhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrld
iftrvmtdnaqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesev
lklhetetlvasenpnvtgggialsidlkgfgengligyrgkhhtavvdvdkkaqhdvld
fweplfargraelildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpg
fghaqaggtgsravlevrshevpfilehgqivgrlvyehmlekpeglygtglgsnyqaqg
lklskhfrae

    Sequence, based on observed residues (ATOM records):
    >2r9qB (B:)
rttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmpgpgtrvi
dklnrflhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrldiftrvmtd
naqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesevlklhetet
lvasenpnvtgialsidlkgfgengligyrgkhhtavvdvdkkaqhdvldfweplfargr
aelildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpgfghaqggtgs
ravlevrshevpfilehgqivgrlvyehmlekpeglygtglg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >2r9qC (C:)
mtrttgtrttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmp
gpgtrvidklnrfslhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrld
iftrvmtdnaqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesev
lklhetetlvasenpnvtgggialsidlkgfgengligyrgkhhtavvdvdkkaqhdvld
fweplfargraelildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpg
fghaqaggtgsravlevrshevpfilehgqivgrlvyehmlekpeglygtglgsnyqaqg
lklskhfrae

    Sequence, based on observed residues (ATOM records):
    >2r9qC (C:)
rttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmpgpgtrvi
dklnrlhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrldiftrvmtdn
aqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesevlklhetetl
vasnpnvtgialsidlkgfgengligyrgkhhtavvdvdkkaqhdvldfweplfargrae
lildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpgfghaqgtgsrav
levrshevpfilehgqivgrlvyehmlekpe

  • Chain 'D':
    Sequence, based on SEQRES records:
    >2r9qD (D:)
mtrttgtrttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmp
gpgtrvidklnrfslhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrld
iftrvmtdnaqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesev
lklhetetlvasenpnvtgggialsidlkgfgengligyrgkhhtavvdvdkkaqhdvld
fweplfargraelildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpg
fghaqaggtgsravlevrshevpfilehgqivgrlvyehmlekpeglygtglgsnyqaqg
lklskhfrae

    Sequence, based on observed residues (ATOM records):
    >2r9qD (D:)
rttgiladgairalfagdklkseadldvdqvqpasldlrlgskayrvrasfmpgpgtrvi
dklnrflhevdlsqgavletgcvyivplmeslalpadmsasanpksstgrldiftrvmtd
naqefdkipagytgplyleisprtfpivvrrgsrlsqirfrighallnesevlklhetet
lvaenpnvtgialsidlkgfgengligyrgkhhtavvdvdkkaqhdvldfweplfargra
elildpdefyilvsreavhvpplyaaemtpfdplvgefrvhyagffdpgfghaqaggtgs
ravlevrshevpfilehgqivgrlvyehml

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >2r9qX (X:)
snpacva

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >2r9qY (Y:)
vevplagav