PDB entry 2r9l

View 2r9l on RCSB PDB site
Description: polymerase domain from mycobacterium tuberculosis ligase d in complex with dna
Deposited on 2007-09-13, released 2008-01-08
The last revision was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative DNA ligase-like protein
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Gene: Rv0938
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative DNA ligase-like protein
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Gene: Rv0938
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(p*dgp*dcp*dgp*dgp*dc)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*dgp*dcp*dcp*dgp*dcp*dap*dap*dcp*dgp*dcp*da)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: DNA (5'-d(p*dgp*dcp*dgp*dgp*dc)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*dgp*dcp*dcp*dgp*dcp*dap*dap*dcp*dgp*dcp*dap*dcp*dg)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: EDO, PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >2r9lA (A:)
gshmgsaseqrvtltnadkvlypatgttksdifdyyagvaevmlghiagrpatrkrwpng
vdqpaffekqlalsappwlsratvahrsgtttypiidsatglawiaqqaalevhvpqwrf
vaepgsgelnpgpatrlvfdldpgegvmmaqlaevaravrdlladiglvtfpvtsgskgl
hlytpldepvssrgatvlakrvaqrleqampalvtstmtkslragkvfvdwsqnsgsktt
iapyslrgrthptvaaprtwaelddpalrqlsydevltriardgdllerldadapvadrl
try

    Sequence, based on observed residues (ATOM records):
    >2r9lA (A:)
eqrvtltnadkvlypatgttksdifdyyagvaevmlghiagrpatrkrwpngvdqpaffe
kqlalsappwlsratvahrsgtttypiidsatglawiaqqaalevhvpqwrfvaepgsge
lnpgpatrlvfdldpgegvmmaqlaevaravrdlladiglvtfpvtsgskglhlytplde
pvssrgatvlakrvaqrleqampalvtstmtkslragkvfvdwsqnsgskttiapyslrg
rthptvaaprtwaelddpalrqlsydevltriardgdllerldadap

  • Chain 'B':
    Sequence, based on SEQRES records:
    >2r9lB (B:)
gshmgsaseqrvtltnadkvlypatgttksdifdyyagvaevmlghiagrpatrkrwpng
vdqpaffekqlalsappwlsratvahrsgtttypiidsatglawiaqqaalevhvpqwrf
vaepgsgelnpgpatrlvfdldpgegvmmaqlaevaravrdlladiglvtfpvtsgskgl
hlytpldepvssrgatvlakrvaqrleqampalvtstmtkslragkvfvdwsqnsgsktt
iapyslrgrthptvaaprtwaelddpalrqlsydevltriardgdllerldadapvadrl
try

    Sequence, based on observed residues (ATOM records):
    >2r9lB (B:)
rvtltnadkvlypatgttksdifdyyagvaevmlghiagrpatrkrwpngvdqpaffekq
lalsappwlsratvahrsgtttypiidsatglawiaqqaalevhvpqwrfvaepgsgeln
pgpatrlvfdldpgegvmmaqlaevaravrdlladiglvtfpvtsgskglhlytpldepv
ssrgatvlakrvaqrleqampalvtstmtkslragkvfvdwsqnsgskttiapyslrgrt
hptvaaprtwaelddpalrqlsydevltriardgdllerlda

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.