SCOPe 2.05: Structural Classification of Proteins

PDB entry 2r8x

View 2r8x on RCSB PDB site
Description: Crystal structure of YrbI phosphatase from Escherichia coli
Class: hydrolase
Keywords: YrbI, phosphatase KDO8-P, HYDROLASE
Deposited on 2007-09-11, released 2008-09-23
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.203
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xa_
Chain 'B':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xb_
Chain 'C':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xc_
Chain 'D':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xd_
Chain 'E':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xe_
Chain 'F':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653
Domains in SCOPe 2.05: d2r8xf_
Chain 'G':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xg_
Chain 'H':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xh_
Chain 'I':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xi_
Chain 'J':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xj_
Chain 'K':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xk_
Chain 'L':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xl_
Chain 'M':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xm_
Chain 'N':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xn_
Chain 'O':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xo_
Chain 'P':
Compound: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Species: Escherichia coli [TaxId:562]
Gene: yrbI
Database cross-references and differences (RAF-indexed):
- Uniprot P67653 (Start-187)
Domains in SCOPe 2.05: d2r8xp_
Heterogens: CL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2r8xA (A:)
mskagaslatcygpvsadvmakaenirllildvdgvlsdgliymgnngeelkafnvrdgy
gircaltsdievaiitgrkaklvedrcatlgithlyqgqsnkliafsdlleklaiapenv
ayvgddlidwpvmekvglsvavadahpllipradyvtriaggrgavrevcdllllaqgkl
deakgqsi