PDB entry 2r7d

View 2r7d on RCSB PDB site
Description: Crystal structure of ribonuclease II family protein from Deinococcus radiodurans, triclinic crystal form. NorthEast Structural Genomics target DrR63
Class: hydrolase
Keywords: Ribonuclease II family protein, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, HYDROLASE
Deposited on 2007-09-07, released 2007-10-02
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-02-01, with a file datestamp of 2012-01-27.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.221
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease II family protein
    Species: Deinococcus radiodurans [TaxId:243230]
    Gene: DR_0020
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RYD0 (Start-460)
      • expression tag (461-462)
    Domains in SCOPe 2.06: d2r7da1, d2r7da2, d2r7da3
  • Chain 'B':
    Compound: Ribonuclease II family protein
    Species: Deinococcus radiodurans [TaxId:243230]
    Gene: DR_0020
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2r7db1, d2r7db2
  • Chain 'C':
    Compound: Ribonuclease II family protein
    Species: Deinococcus radiodurans [TaxId:243230]
    Gene: DR_0020
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2r7dc1, d2r7dc2
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2r7dA (A:)
mtqpeltpaqrtevellargradksrvlrdlklpetpeaahalllrlgvwdeartpyadr
lraalnavelpvpdfdpaeerldlthlptfaiddegnqdpddavgvedlgggltrlwvhv
advaalvapdspldlearargatlylpdrtigmlpdelvakaglglhevspalsicldld
pdgnaeavdvlltrvkvqrlayqeaqarleageepfvtlarlarasrrlregegalsidl
pevrvkadetgasvfplpkpemrtvvqecmtlagwgtaifaddneiplpfatqdyptrev
agdtlpamwarrktlartrfqpspgphhgmgldlyaqatspmrryldlvvhqqlraflag
rdplsskvmaahiaesqmnadatrqaerlsrrhhtlrfiaaqpervwdavvvdrrgaqat
llipdlafdvqvntpaapgtalqvqfadidlpqmrvrarsvlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2r7dA (A:)
qpeltpaqrtevellargradksrvlrdlklpetpeaahalllrlgvwdeartpyadrlr
aalnavelpvpdfdpaeerldlthlptfaiddegnqdpddavgvedlgggltrlwvhvad
vaalvapdspldlearargatlylpdrtigmlpdelvakaglglhevspalsicldldpd
gnaeavdvlltrvkvqrlayqeaqarleageepfvtlarlarasrrlregegalsidlpe
vrvkadetgasvfplpkpemrtvvqecmtlagwgtaifaddneiplpfatqdyptrevag
dtlpamwarrktlartrfqpspgphhgmgldlyaqatspmrryldlvvhqqlraflagrd
plsskvmaahiaesqmnadatrqaerlsrrhhtlrfiaaqpervwdavvvdrrgaqatll
ipdlafdvqvntpaapgtalqvqfadidlpqmrvrarsvle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2r7dB (B:)
mtqpeltpaqrtevellargradksrvlrdlklpetpeaahalllrlgvwdeartpyadr
lraalnavelpvpdfdpaeerldlthlptfaiddegnqdpddavgvedlgggltrlwvhv
advaalvapdspldlearargatlylpdrtigmlpdelvakaglglhevspalsicldld
pdgnaeavdvlltrvkvqrlayqeaqarleageepfvtlarlarasrrlregegalsidl
pevrvkadetgasvfplpkpemrtvvqecmtlagwgtaifaddneiplpfatqdyptrev
agdtlpamwarrktlartrfqpspgphhgmgldlyaqatspmrryldlvvhqqlraflag
rdplsskvmaahiaesqmnadatrqaerlsrrhhtlrfiaaqpervwdavvvdrrgaqat
llipdlafdvqvntpaapgtalqvqfadidlpqmrvrarsvlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2r7dB (B:)
qpeltpaqrtevellargradksrvlrdlklpetpeaahalllrlgvwdeartpyadrlr
aalnavelpvpdfdpaeerldlthlptfaiddegnqdpddavgvedlgggltrlwvhvad
vaalvapdspldlearargatlylpdrtigmlpdelvakaglglhevspalsicldldpd
gnaeavdvlltrvkvqrlayqeaqarleageepfvtlarlarasrrlregegalsidlpe
vrvkadetgasvfplpkpemrtvvqecmtlagwgtaifaddneiplpfatqdyptrevag
dtlpamwarrktlartrfqpspgphhgmgldlyaqatspmrryldlvvhqqlraflagrd
plsskvmaahiaesqmnadatrqaerlsrrhhtlrfiaaqpervwdavvvdrrgaqatll
ipdlafdvqvntpaapgtalqvqfadidlpqmrvrarsv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2r7dC (C:)
mtqpeltpaqrtevellargradksrvlrdlklpetpeaahalllrlgvwdeartpyadr
lraalnavelpvpdfdpaeerldlthlptfaiddegnqdpddavgvedlgggltrlwvhv
advaalvapdspldlearargatlylpdrtigmlpdelvakaglglhevspalsicldld
pdgnaeavdvlltrvkvqrlayqeaqarleageepfvtlarlarasrrlregegalsidl
pevrvkadetgasvfplpkpemrtvvqecmtlagwgtaifaddneiplpfatqdyptrev
agdtlpamwarrktlartrfqpspgphhgmgldlyaqatspmrryldlvvhqqlraflag
rdplsskvmaahiaesqmnadatrqaerlsrrhhtlrfiaaqpervwdavvvdrrgaqat
llipdlafdvqvntpaapgtalqvqfadidlpqmrvrarsvlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2r7dC (C:)
qpeltpaqrtevellargradksrvlrdlklpetpeaahalllrlgvwdeartpyadrlr
aalnavelpvpdfdpaeerldlthlptfaiddegnqdpddavgvedlgggltrlwvhvad
vaalvapdspldlearargatlylpdrtigmlpdelvakaglglhevspalsicldldpd
gnaeavdvlltrvkvqrlayqeaqarleageepfvtlarlarasrrlregegalsidlpe
vrvkadetgasvfplpkpemrtvvqecmtlagwgtaifaddneiplpfatqdyptrevag
dtlpamwarrktlartrfqpspgphhgmgldlyaqatspmrryldlvvhqqlraflagrd
plsskvmaahiaesqmnadatrqaerlsrrhhtlrfiaaqpervwdavvvdrrgaqatll
ipdlafdvqvntpaapgtalqvqfadidlpqmrvrarsv