PDB entry 2r3y
View 2r3y on RCSB PDB site
Description: Crystal structure of the DegS protease in complex with the YWF activating peptide
Class: hydrolase/hydrolase activator
Keywords: reversible activation of a protease, catalytic triad, Hydrolase, Periplasm, Serine protease, hydrolase/hydrolase activator COMPLEX
Deposited on
2007-08-30, released
2007-11-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.204
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Protease degS
Species: Escherichia coli [TaxId:562]
Gene: degS, hhoB, htrH
Database cross-references and differences (RAF-indexed):
- Uniprot P0AEE3 (1-End)
- initiating methionine (0)
Domains in SCOPe 2.08: d2r3ya1, d2r3ya2 - Chain 'B':
Compound: Protease degS
Species: Escherichia coli [TaxId:562]
Gene: degS, hhoB, htrH
Database cross-references and differences (RAF-indexed):
- Uniprot P0AEE3 (1-End)
- initiating methionine (0)
Domains in SCOPe 2.08: d2r3yb1, d2r3yb2 - Chain 'C':
Compound: Protease degS
Species: Escherichia coli [TaxId:562]
Gene: degS, hhoB, htrH
Database cross-references and differences (RAF-indexed):
- Uniprot P0AEE3 (1-End)
- initiating methionine (0)
Domains in SCOPe 2.08: d2r3yc1, d2r3yc2 - Chain 'D':
Compound: Synthetic peptide YWF
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Synthetic peptide YWF
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Synthetic peptide YWF
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2r3yA (A:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn
Sequence, based on observed residues (ATOM records): (download)
>2r3yA (A:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggivvnevspdgpaanagiq
vndliisvdnkpatmdqvaeirpgsvipvvvlqvtiqeyp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2r3yB (B:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn
Sequence, based on observed residues (ATOM records): (download)
>2r3yB (B:)
mtpasynlavrraapavvnvynrglqleirtlgsgvimdqrgyiitnkhvindadqiiva
lqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignpynlgqt
itqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfdksndge
tpegigfaipfqlatkimdklirdgrvirgyigiggivvnevspdgpaanagiqvndlii
svdnkpatmdqvaeirpgsvipvvvlqvtiqeyp
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2r3yC (C:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn
Sequence, based on observed residues (ATOM records): (download)
>2r3yC (C:)
mtpasynlavrraapavvnvynrglnqleirtlgsgvimdqrgyiitnkhvindadqiiv
alqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignpynlgq
titqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfdksndg
etpegigfaipfqlatkimdklirdgrvirgyigiggivvnevspdgpaanagiqvndli
isvdnkpatmdqvaeirpgsvipvvvlqvtiqeyp
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.