PDB entry 2qy0

View 2qy0 on RCSB PDB site
Description: Active dimeric structure of the catalytic domain of C1r reveals enzyme-product like contacts
Class: hydrolase
Keywords: complement, serine protease, beta barrel, Complement pathway, EGF-like domain, Glycoprotein, Hydrolase, Hydroxylation, Immune response, Innate immunity, Phosphorylation, Sushi
Deposited on 2007-08-13, released 2008-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.213
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Complement C1r subcomponent
    Species: Homo sapiens [TaxId:9606]
    Gene: C1R
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00736 (4-158)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d2qy0a1, d2qy0a2, d2qy0a3
  • Chain 'B':
    Compound: Complement C1r subcomponent
    Species: Homo sapiens [TaxId:9606]
    Gene: C1R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qy0b_
  • Chain 'C':
    Compound: Complement C1r subcomponent
    Species: Homo sapiens [TaxId:9606]
    Gene: C1R
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00736 (4-158)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d2qy0c1, d2qy0c2, d2qy0c3
  • Chain 'D':
    Compound: Complement C1r subcomponent
    Species: Homo sapiens [TaxId:9606]
    Gene: C1R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qy0d_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2qy0A (A:)
    stqacpqpktldeftiiqnlqpqyqfrdyfiatckqgyqliegnqvlhsftavcqddgtw
    hramprckikdcgqprnlpngdfrytttmgvntykariqyychepyykmqtragsreseq
    gvytctaqgiwkneqkgekiprclpvcgkpvnpveqrqr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qy0A (A:)
    qacpqpktldeftiiqnlqpqyqfrdyfiatckqgyqliegnqvlhsftavcqddgtwhr
    amprckikdcgqprnlpngdfrytttmgvntykariqyychepyykmqtrreseqgvytc
    taqgiwkneqkgekiprclpvcgkpvnpveqrqr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2qy0B (B:)
    iiggqkakmgnfpwqvftnihgrgggallgdrwiltaahtlypkeheaqsnasldvflgh
    tnveelmklgnhpirrvsvhpdyrqdesynfegdiallelensvtlgpnllpiclpdndt
    fydlglmgyvsgfgvmeekiahdlrfvrlpvanpqacenwlrgknrmdvfsqnmfcaghp
    slkqdacqgdsggvfavrdpntdrwvatgivswgigcsrgygfytkvlnyvdwikkemee
    ed
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qy0B (B:)
    iiggqkakmgnfpwqvftnihgrgggallgdrwiltaahtlypkeheasldvflghtnve
    elmklgnhpirrvsvhpdyrqdesynfegdiallelensvtlgpnllpiclpdndtfydl
    glmgyvsgfgvmeekiahdlrfvrlpvanpqacenwlrgknrmdvfsqnmfcaghpslkq
    dacqgdsggvfavrdpntdrwvatgivswgigcsrgygfytkvlnyvdwikkemee
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2qy0C (C:)
    stqacpqpktldeftiiqnlqpqyqfrdyfiatckqgyqliegnqvlhsftavcqddgtw
    hramprckikdcgqprnlpngdfrytttmgvntykariqyychepyykmqtragsreseq
    gvytctaqgiwkneqkgekiprclpvcgkpvnpveqrqr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qy0C (C:)
    qacpqpktldeftiiqnlqpqyqfrdyfiatckqgyqliegnqvlhsftavcqddgtwhr
    amprckikdcgqprnlpngdfrytttmgvntykariqyychepyykmqtreseqgvytct
    aqgiwkneqkgekiprclpvcgkpvnpveqrqr
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2qy0D (D:)
    iiggqkakmgnfpwqvftnihgrgggallgdrwiltaahtlypkeheaqsnasldvflgh
    tnveelmklgnhpirrvsvhpdyrqdesynfegdiallelensvtlgpnllpiclpdndt
    fydlglmgyvsgfgvmeekiahdlrfvrlpvanpqacenwlrgknrmdvfsqnmfcaghp
    slkqdacqgdsggvfavrdpntdrwvatgivswgigcsrgygfytkvlnyvdwikkemee
    ed
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qy0D (D:)
    iiggqkakmgnfpwqvftnihgrgggallgdrwiltaahtlypkehsnasldvflghtnv
    eelmklgnhpirrvsvhpdyrqdesynfegdiallelensvtlgpnllpiclpdndtfyd
    lglmgyvsgfgvmeekiahdlrfvrlpvanpqacenwlrgknrmdvfsqnmfcaghpslk
    qdacqgdsggvfavrdpntdrwvatgivswgigcsrgygfytkvlnyvdwikkemee