PDB entry 2qqs

View 2qqs on RCSB PDB site
Description: JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide
Class: oxidoreductase
Keywords: HISTONE LYSINE DEMETHYLASE, METAL BINDING PROTEIN, PROTEIN-METHYLATED PEPTIDE COMPLEX, Chromatin regulator, Dioxygenase, Host-virus interaction, Iron, Metal-binding, Nucleus, Oxidoreductase, Phosphorylation, Polymorphism, Transcription, Transcription regulation, Zinc, Zinc-finger
Deposited on 2007-07-26, released 2007-12-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.82 Å
R-factor: 0.238
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: JmjC domain-containing histone demethylation protein 3A
    Species: Homo sapiens [TaxId:9606]
    Gene: JMJD2A, JHDM3A, JMJD2, KIAA0677
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qqsa1, d2qqsa2
  • Chain 'B':
    Compound: JmjC domain-containing histone demethylation protein 3A
    Species: Homo sapiens [TaxId:9606]
    Gene: JMJD2A, JHDM3A, JMJD2, KIAA0677
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qqsb1, d2qqsb2
  • Chain 'C':
    Compound: methylated histone h4 peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2QQS
  • Chain 'D':
    Compound: methylated histone h4 peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 2QQS
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2qqsA (A:)
    ghmqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclq
    fgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qqsA (A:)
    qsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgp
    paegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvyt
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2qqsB (B:)
    ghmqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclq
    fgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qqsB (B:)
    itagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgppa
    egevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytl
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.