PDB entry 2qqs
View 2qqs on RCSB PDB site
Description: JMJD2A tandem tudor domains in complex with a trimethylated histone H4-K20 peptide
Class: oxidoreductase
Keywords: HISTONE LYSINE DEMETHYLASE, METAL BINDING PROTEIN, PROTEIN-METHYLATED PEPTIDE COMPLEX, Chromatin regulator, Dioxygenase, Host-virus interaction, Iron, Metal-binding, Nucleus, Oxidoreductase, Phosphorylation, Polymorphism, Transcription, Transcription regulation, Zinc, Zinc-finger
Deposited on
2007-07-26, released
2007-12-11
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.82 Å
R-factor: 0.238
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: JmjC domain-containing histone demethylation protein 3A
Species: Homo sapiens [TaxId:9606]
Gene: JMJD2A, JHDM3A, JMJD2, KIAA0677
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2qqsa1, d2qqsa2 - Chain 'B':
Compound: JmjC domain-containing histone demethylation protein 3A
Species: Homo sapiens [TaxId:9606]
Gene: JMJD2A, JHDM3A, JMJD2, KIAA0677
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2qqsb1, d2qqsb2 - Chain 'C':
Compound: methylated histone h4 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: methylated histone h4 peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2qqsA (A:)
ghmqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclq
fgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp
Sequence, based on observed residues (ATOM records): (download)
>2qqsA (A:)
qsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgp
paegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvyt
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2qqsB (B:)
ghmqsitagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclq
fgppaegevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytldeelp
Sequence, based on observed residues (ATOM records): (download)
>2qqsB (B:)
itagqkviskhkngrfyqcevvrlttetfyevnfddgsfsdnlypedivsqdclqfgppa
egevvqvrwtdgqvygakfvashpiqmyqvefedgsqlvvkrddvytl
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.