PDB entry 2qkm

View 2qkm on RCSB PDB site
Description: The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex
Class: hydrolase
Keywords: Protein-Protein complex, Hydrolase
Deposited on 2007-07-11, released 2008-04-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.236
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: SPBC3B9.21 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: DCP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P805 (0-126)
• Chain 'B':
  Compound: SPAC19A8.12 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: SPAC19A8.12
  Database cross-references and differences (RAF-indexed):
  • Uniprot O13828 (0-265)
• Chain 'C':
  Compound: SPBC3B9.21 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: DCP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P805 (0-End)
• Chain 'D':
  Compound: SPAC19A8.12 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: SPAC19A8.12
  Database cross-references and differences (RAF-indexed):
  • Uniprot O13828 (0-End)
  Domains in SCOPe 2.07: d2qkmd1, d2qkmd2
• Chain 'E':
  Compound: SPBC3B9.21 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: DCP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P805 (0-126)
• Chain 'F':
  Compound: SPAC19A8.12 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: SPAC19A8.12
  Database cross-references and differences (RAF-indexed):
  • Uniprot O13828 (0-265)
• Chain 'G':
  Compound: SPBC3B9.21 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: DCP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9P805 (0-126)
• Chain 'H':
  Compound: SPAC19A8.12 protein
  Species: Schizosaccharomyces pombe [TaxId:4896]
  Gene: SPAC19A8.12
  Database cross-references and differences (RAF-indexed):
  • Uniprot O13828 (0-End)
  Domains in SCOPe 2.07: d2qkmh1, d2qkmh2
• Heterogens: ATP, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence, based on SEQRES records: (download)
  

  >2qkmD (D:)
  msftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpslg
  lrvfsaklfahcpllwkwskvheeafddflryktripvrgaimldmsmqqcvlvkgwkas
  sgwgfpkgkidkdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyiipgis
  ldtrfesrtrkeiskiewhnlmdlptfkknkpqtmknkfymvipflaplkkwikkrnian
  nttkeknisvdvdadassqllsllks
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2qkmD (D:)
  msftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpslg
  lrvfsaklfahcwkwskvheeafddflryktripvrgaimldmsmqqcvlvwgfpkgkid
  kdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyiipgisldtrfesriew
  hnlmdlptymvipflaplkkwi
  

  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  Sequence, based on SEQRES records: (download)
  

  >2qkmH (H:)
  msftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpslg
  lrvfsaklfahcpllwkwskvheeafddflryktripvrgaimldmsmqqcvlvkgwkas
  sgwgfpkgkidkdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyiipgis
  ldtrfesrtrkeiskiewhnlmdlptfkknkpqtmknkfymvipflaplkkwikkrnian
  nttkeknisvdvdadassqllsllks
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2qkmH (H:)
  msftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpslg
  lrvfsaklfahckwskvheeafddflryktripvrgaimldmsmqqcvlvgwgfpkgkid
  kdesdvdcairevyeetgfdcssrinpnefidmtirgqnvrlyiiewhnlmdlptmvipf
  laplkkwikk