PDB entry 2qho

View 2qho on RCSB PDB site
Description: Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin
Class: protein binding/ligase
Keywords: protein-protein complex, protein binding/ligase COMPLEX
Deposited on 2007-07-02, released 2007-09-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.209
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2qhoa_
  • Chain 'B':
    Compound: E3 ubiquitin-protein ligase EDD1
    Species: Homo sapiens [TaxId:9606]
    Gene: EDD1, EDD, HYD, KIAA0896
    Database cross-references and differences (RAF-indexed):
    • Uniprot O95071 (2-End)
      • cloning artifact (1)
  • Chain 'C':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2qhoc_
  • Chain 'D':
    Compound: E3 ubiquitin-protein ligase EDD1
    Species: Homo sapiens [TaxId:9606]
    Gene: EDD1, EDD, HYD, KIAA0896
    Database cross-references and differences (RAF-indexed):
    • Uniprot O95071 (2-End)
      • cloning artifact (0-1)
  • Chain 'E':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2qhoe_
  • Chain 'F':
    Compound: E3 ubiquitin-protein ligase EDD1
    Species: Homo sapiens [TaxId:9606]
    Gene: EDD1, EDD, HYD, KIAA0896
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2qhog_
  • Chain 'H':
    Compound: E3 ubiquitin-protein ligase EDD1
    Species: Homo sapiens [TaxId:9606]
    Gene: EDD1, EDD, HYD, KIAA0896
    Database cross-references and differences (RAF-indexed):
    • Uniprot O95071 (2-End)
      • cloning artifact (1)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2qhoA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qhoA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlr
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2qhoC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2qhoE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qhoE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrg
    

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2qhoG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2qhoG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlr
    

  • Chain 'H':
    No sequence available.