PDB entry 2q5r

View 2q5r on RCSB PDB site
Description: Structure of apo Staphylococcus aureus D-tagatose-6-phosphate kinase
Class: transferase
Keywords: transferase, D-tagatose-6-phosphate kinase, phosphoryl transfer, conformational change, kinase, lactose metabolism
Deposited on 2007-06-01, released 2007-06-12
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.218
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tagatose-6-phosphate kinase
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: lacC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE12 (20-329)
      • cloning artifact (12-19)
      • modified residue (20)
      • modified residue (301)
    Domains in SCOPe 2.03: d2q5ra_
  • Chain 'B':
    Compound: tagatose-6-phosphate kinase
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: lacC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE12 (20-329)
      • cloning artifact (18-19)
      • modified residue (20)
      • modified residue (301)
    Domains in SCOPe 2.03: d2q5rb_
  • Chain 'C':
    Compound: tagatose-6-phosphate kinase
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: lacC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE12 (20-329)
      • cloning artifact (19)
      • modified residue (20)
      • modified residue (301)
    Domains in SCOPe 2.03: d2q5rc_
  • Chain 'D':
    Compound: tagatose-6-phosphate kinase
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: lacC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE12 (20-329)
      • cloning artifact (12-19)
      • modified residue (20)
      • modified residue (301)
    Domains in SCOPe 2.03: d2q5rd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2q5rA (A:)
mgsshhhhhhssglvprgshmiltltlnpsvdisypltalklddvnrvqevsktaggkgl
nvtrvlaqvgepvlasgfiggelgqfiakkldhadikhafynikgetrnciailhegqqt
eileqgpeidnqeaagfikhfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpv
ildcsgatlqtvlenpykptvikpniselyqllnqpldesleslkqavsqplfegiewii
vslgaqgafakhnhtfyrvniptisvlnpvgsgdstvagitsailnhendhdllkkantl
gmlnaqeaqtgyvnlnnyddlfnqievlev

    Sequence, based on observed residues (ATOM records): (download) 
    >2q5rA (A:)
glvprgshmiltltlnpsvdisypltalklddvnrvqevsktaggkglnvtrvlaqvgep
vlasgfiggelgqfiakkldhadikhafynikgetrnciailhegqqteileqgpeidnq
eaagfikhfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpvildcsgatlqtv
lenpykptvikpniselyqllnqpldesleslkqavsqplfegiewiivslgaqgafakh
nhtfyrvniptisvlnpvgsgdstvagitsailnhendhdllkkantlgmlnaqeaqtgy
vnlnnyddlfnqievlev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2q5rB (B:)
mgsshhhhhhssglvprgshmiltltlnpsvdisypltalklddvnrvqevsktaggkgl
nvtrvlaqvgepvlasgfiggelgqfiakkldhadikhafynikgetrnciailhegqqt
eileqgpeidnqeaagfikhfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpv
ildcsgatlqtvlenpykptvikpniselyqllnqpldesleslkqavsqplfegiewii
vslgaqgafakhnhtfyrvniptisvlnpvgsgdstvagitsailnhendhdllkkantl
gmlnaqeaqtgyvnlnnyddlfnqievlev

    Sequence, based on observed residues (ATOM records): (download) 
    >2q5rB (B:)
shmiltltlnpsvdisypltalklddvnrvqevsktaggkglnvtrvlaqvgepvlasgf
iggelgqfiakkldhadikhafynikgetrnciailhegqqteileqgpeidnqeaagfi
khfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpvildcsgatlqtvlenpyk
ptvikpniselyqllnqpldesleslkqavsqplfegiewiivslgaqgafakhnhtfyr
vniptisvlnpvgsgdstvagitsailnhendhdllkkantlgmlnaqeaqtgyvnlnny
ddlfnqievlev

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2q5rC (C:)
mgsshhhhhhssglvprgshmiltltlnpsvdisypltalklddvnrvqevsktaggkgl
nvtrvlaqvgepvlasgfiggelgqfiakkldhadikhafynikgetrnciailhegqqt
eileqgpeidnqeaagfikhfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpv
ildcsgatlqtvlenpykptvikpniselyqllnqpldesleslkqavsqplfegiewii
vslgaqgafakhnhtfyrvniptisvlnpvgsgdstvagitsailnhendhdllkkantl
gmlnaqeaqtgyvnlnnyddlfnqievlev

    Sequence, based on observed residues (ATOM records): (download) 
    >2q5rC (C:)
hmiltltlnpsvdisypltalklddvnrvqevsktaggkglnvtrvlaqvgepvlasgfi
ggelgqfiakkldhadikhafynikgetrnciailhegqqteileqgpeidnqeaagfik
hfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpvildcsgatlqtvlenpykp
tvikpniselyqllnqpldesleslkqavsqplfegiewiivslgaqgafakhnhtfyrv
niptipvgsgdstvagitsailnhendhdllkkantlgmlnatgyvnlnnyddlfnqiev
lev

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2q5rD (D:)
mgsshhhhhhssglvprgshmiltltlnpsvdisypltalklddvnrvqevsktaggkgl
nvtrvlaqvgepvlasgfiggelgqfiakkldhadikhafynikgetrnciailhegqqt
eileqgpeidnqeaagfikhfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpv
ildcsgatlqtvlenpykptvikpniselyqllnqpldesleslkqavsqplfegiewii
vslgaqgafakhnhtfyrvniptisvlnpvgsgdstvagitsailnhendhdllkkantl
gmlnaqeaqtgyvnlnnyddlfnqievlev

    Sequence, based on observed residues (ATOM records): (download) 
    >2q5rD (D:)
glvprgshmiltltlnpsvdisypltalklddvnrvqevsktaggkglnvtrvlaqvgep
vlasgfiggelgqfiakkldhadikhafynikgetrnciailhegqqteileqgpeidnq
eaagfikhfeqllekveavaisgslpkglnqdyyaqiiercqnkgvpvildcsgatlqtv
lenpykptvikpniselyqllnqpldesleslkqavsqplfegiewiivslgaqgafakh
nhtfyrvniptpvgsgdstvagitsailnhendhdllkkantlgmlnaqeayvnlnnydd
lfnqievlev