PDB entry 2q4d

View 2q4d on RCSB PDB site
Description: Ensemble refinement of the crystal structure of a lysine decarboxylase-like protein from Arabidopsis thaliana gene At5g11950
Class: structural genomics, unknown function
Keywords: Ensemble Refinement, Refinement Methodology Development, AT5G11950, LYSINE DECARBOXYLASE-LIKE PROTEIN, Structural Genomics, Protein Structure Initiative, PSI, Center for Eukaryotic Structural Genomics, CESG, UNKNOWN FUNCTION
Deposited on 2007-05-31, released 2007-06-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-08-10, with a file datestamp of 2011-08-05.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.152
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lysine decarboxylase-like protein At5g11950
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AT5G11950, F14F18.120
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q84MC2
      • modified residue (53)
      • modified residue (76)
      • modified residue (94)
      • modified residue (101)
      • modified residue (118)
      • modified residue (124)
      • modified residue (180)
      • modified residue (183)
    Domains in SCOPe 2.08: d2q4da_
  • Chain 'B':
    Compound: Lysine decarboxylase-like protein At5g11950
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AT5G11950, F14F18.120
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q84MC2
      • modified residue (53)
      • modified residue (76)
      • modified residue (94)
      • modified residue (101)
      • modified residue (118)
      • modified residue (124)
      • modified residue (180)
      • modified residue (183)
    Domains in SCOPe 2.08: d2q4db_
  • Heterogens: NO3, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2q4dA (A:)
sednqrsrfrkicvfcgshsghrevfsdaaielgnelvkrkidlvygggsvglmglisrr
vyegglhvlgiipkalmpieisgetvgdvrvvadmherkaamaqeaeafialpggygtme
ellemitwsqlgihkktvgllnvdgyynnllalfdtgveegfikpgarnivvsaptakel
mekmeeytpshmhvasheswkveelgdypgqenkpq

    Sequence, based on observed residues (ATOM records): (download) 
    >2q4dA (A:)
qrsrfrkicvfcgshsghrevfsdaaielgnelvkrkidlvygggsvglmglisrrvyeg
glhvlgiipkalmpieisgetvgdvrvvadmherkaamaqeaeafialpggygtmeelle
mitwsqlgihkktvgllnvdgyynnllalfdtgveegfikpgarnivvsaptakelmekm
eeyt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2q4dB (B:)
sednqrsrfrkicvfcgshsghrevfsdaaielgnelvkrkidlvygggsvglmglisrr
vyegglhvlgiipkalmpieisgetvgdvrvvadmherkaamaqeaeafialpggygtme
ellemitwsqlgihkktvgllnvdgyynnllalfdtgveegfikpgarnivvsaptakel
mekmeeytpshmhvasheswkveelgdypgqenkpq

    Sequence, based on observed residues (ATOM records): (download) 
    >2q4dB (B:)
rfrkicvfcgshsghrevfsdaaielgnelvkrkidlvygggsvglmglisrrvyegglh
vlgiipkalmpieisgetvgdvrvvadmherkaamaqeaeafialpggygtmeellemit
wsqlgihkktvgllnvdgyynnllalfdtgveegfikpgarnivvsaptakelmekmeey
t