PDB entry 2q2u

View 2q2u on RCSB PDB site
Description: Structure of Chlorella virus DNA ligase-product DNA complex
Class: ligase/DNA
Keywords: ligase, product-complex, protein-DNA complex, ligase-DNA complex
Deposited on 2007-05-29, released 2007-07-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2q2ua1, d2q2ua2
  • Chain 'B':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2q2ub1, d2q2ub2
  • Chain 'C':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2q2uc1, d2q2uc2
  • Chain 'D':
    Compound: Chlorella virus DNA ligase
    Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
    Gene: A544R
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2q2ud1, d2q2ud2
  • Chain 'E':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'F':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Chain 'G':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'H':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Chain 'I':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'J':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Chain 'K':
    Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
    Species: synthetic, synthetic
  • Chain 'L':
    Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2q2uA (A:)
    mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
    lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
    yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
    fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
    rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
    skdcprfpvfigirheedr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2q2uA (A:)
    maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
    pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
    tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
    egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
    dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2q2uB (B:)
    mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
    lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
    yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
    fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
    rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
    skdcprfpvfigirheedr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2q2uB (B:)
    maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
    pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
    tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
    egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
    dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2q2uC (C:)
    mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
    lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
    yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
    fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
    rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
    skdcprfpvfigirheedr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2q2uC (C:)
    maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
    pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
    tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
    egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
    dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2q2uD (D:)
    mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
    lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
    yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
    fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
    rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
    skdcprfpvfigirheedr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2q2uD (D:)
    maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
    pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
    tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
    egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
    dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.