PDB entry 2q2u
View 2q2u on RCSB PDB site
Description: Structure of Chlorella virus DNA ligase-product DNA complex
Class: ligase/DNA
Keywords: ligase, product-complex, protein-DNA complex, ligase-DNA complex
Deposited on
2007-05-29, released
2007-07-10
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-18, with a file datestamp of
2017-10-13.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Chlorella virus DNA ligase
Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
Gene: A544R
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2q2ua1, d2q2ua2 - Chain 'B':
Compound: Chlorella virus DNA ligase
Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
Gene: A544R
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2q2ub1, d2q2ub2 - Chain 'C':
Compound: Chlorella virus DNA ligase
Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
Gene: A544R
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2q2uc1, d2q2uc2 - Chain 'D':
Compound: Chlorella virus DNA ligase
Species: Paramecium bursaria Chlorella virus 1 [TaxId:10506]
Gene: A544R
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2q2ud1, d2q2ud2 - Chain 'E':
Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
Species: synthetic, synthetic
- Chain 'F':
Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
Species: synthetic, synthetic
- Chain 'G':
Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
Species: synthetic, synthetic
- Chain 'H':
Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
Species: synthetic, synthetic
- Chain 'I':
Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
Species: synthetic, synthetic
- Chain 'J':
Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
Species: synthetic, synthetic
- Chain 'K':
Compound: 5'-d(*tp*tp*cp*cp*gp*ap*tp*ap*gp*tp*gp*gp*gp*gp*tp*cp*gp*cp*ap*ap*t)-3'
Species: synthetic, synthetic
- Chain 'L':
Compound: 5'-d(*ap*tp*tp*gp*cp*gp*ap*cp*(omc)p*cp*cp*ap*cp*tp*ap*tp*cp*gp*gp*ap*a)-3'
Species: synthetic, synthetic
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2q2uA (A:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr
Sequence, based on observed residues (ATOM records): (download)
>2q2uA (A:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2q2uB (B:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr
Sequence, based on observed residues (ATOM records): (download)
>2q2uB (B:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2q2uC (C:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr
Sequence, based on observed residues (ATOM records): (download)
>2q2uC (C:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2q2uD (D:)
mghhhhhhhhhhssghiegrhmaitkpllaatleniedvqfpclatpkidgirsvkqtqm
lsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfd
yvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskg
fegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgysk
rsthksgkveedvmgsievdydgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemg
skdcprfpvfigirheedr
Sequence, based on observed residues (ATOM records): (download)
>2q2uD (D:)
maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltell
pegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyi
tvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlk
egillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdy
dgvvfsigtgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprfpvfigir
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.