PDB entry 2prr

View 2prr on RCSB PDB site
Description: Crystal structure of alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein (YP_296737.1) from Ralstonia eutropha JMP134 at 2.15 A resolution
Class: oxidoreductase
Keywords: YP_296737.1, Carboxymuconolactone decarboxylase family, Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2
Deposited on 2007-05-04, released 2007-05-29
The last revision prior to the SCOP 1.75 freeze date was dated 2007-05-29, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.213
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prra1
  • Chain 'B':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrb1
  • Chain 'C':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrc1
  • Chain 'D':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrd1
  • Chain 'E':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prre1
  • Chain 'F':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrf1
  • Chain 'G':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrg1
  • Chain 'H':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrh1
  • Chain 'I':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prri1
  • Chain 'J':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrj1
  • Chain 'K':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrk1
  • Chain 'L':
    Compound: Alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein
    Species: Ralstonia eutropha JMP134
    Gene: YP_296737.1, Reut_A2532
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46Y90
      • modified residue (62)
      • modified residue (75)
      • modified residue (126)
      • modified residue (174)
      • modified residue (180)
      • modified residue (189)
    Domains in SCOP 1.75: d2prrl1
  • Heterogens: PGE, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2prrA (A:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrA (A:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvpk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2prrB (B:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrB (B:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvpk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2prrC (C:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrC (C:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2prrD (D:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrD (D:)
rpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalm
lkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadippr
qramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrp
ndefflmgrvp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2prrE (E:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrE (E:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvpk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2prrF (F:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrF (F:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvpk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2prrG (G:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrG (G:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2prrH (H:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrH (H:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvpk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >2prrI (I:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrI (I:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvp

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >2prrJ (J:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrJ (J:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrv

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >2prrK (K:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrK (K:)
rpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalm
lkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadippr
qramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrp
ndefflmgrvp

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >2prrL (L:)
gmtrpahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhd
almlkdggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadi
pprqramldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantig
mrpndefflmgrvpksk

    Sequence, based on observed residues (ATOM records): (download) 
    >2prrL (L:)
ahpisrypvpelaalpddirqrilevqdkagfvpnvfltlahrpdefraffayhdalmlk
dggltkgeremivvatsaanqclycvvahgailriyekkplvadqvavnylkadipprqr
amldfalkvckashevneadfealrehgftdedawdiaaitaffglsnrmantigmrpnd
efflmgrvp