PDB entry 2ppa

View 2ppa on RCSB PDB site
Description: Anaerobically manipulated wild type oxidized AfNiR bound to nitrous oxide
Class: Oxidoreductase
Keywords: nitrite reductase, denitrification, copper, nitrous oxide, bacteria, Oxidoreductase
Deposited on 2007-04-28, released 2008-04-01
The last revision prior to the SCOP 1.75 freeze date was dated 2008-04-22, with a file datestamp of 2008-04-18.
Experiment type: XRAY
Resolution: 1.69 Å
R-factor: 0.193
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ppaa1, d2ppaa2
  • Chain 'B':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ppab1, d2ppab2
  • Chain 'C':
    Compound: Copper-containing nitrite reductase
    Species: Alcaligenes faecalis
    Gene: nirK, nir
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2ppac1, d2ppac2
  • Heterogens: CU1, CU, ACT, N2O, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ppaA (A:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsgtiegr

    Sequence, based on observed residues (ATOM records): (download) 
    >2ppaA (A:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ppaB (B:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsgtiegr

    Sequence, based on observed residues (ATOM records): (download) 
    >2ppaB (B:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsgt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2ppaC (C:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsgtiegr

    Sequence, based on observed residues (ATOM records): (download) 
    >2ppaC (C:)
ataaeiaalprqkvelvdppfvhahsqvaeggpkvveftmvieekkividdagtevhama
fngtvpgplmvvhqddyleltlinpetntlmhnidfhaatgalgggglteinpgektilr
fkatkpgvfvyhcappgmvpwhvvsgmngaimvlpreglhdgkgkaltydkiyyvgeqdf
yvprdengkykkyeapgdayedtvkvmrtltpthvvfngavgaltgdkamtaavgekvli
vhsqanrdtrphligghgdyvwatgkfntppdvdqetwfipggaagaafytfqqpgiyay
vnhnlieafelgaaahfkvtgewnddlmtsvlapsg