PDB entry 2phn

View 2phn on RCSB PDB site
Description: Crystal structure of an amide bond forming F420-gamma glutamyl ligase from Archaeoglobus fulgidus
Class: ligase
Keywords: gamma-glutamyl ligase, coenzyme F420 biosynthesis, amide bond forming enzyme, metal dependent, new fold, GDP binding, MCSG, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics
Deposited on 2007-04-11, released 2007-05-15
The last revision prior to the SCOP 1.73 freeze date was dated 2007-09-04, with a file datestamp of 2007-08-31.
Experiment type: XRAY
Resolution: 1.35 Å
R-factor: 0.162
AEROSPACI score: 0.73 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: F420-0:gamma-glutamyl ligase
    Species: Archaeoglobus fulgidus DSM 4304
    Gene: cofE, AF_2256
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2phna1
  • Chain 'B':
    Compound: F420-0:gamma-glutamyl ligase
    Species: Archaeoglobus fulgidus DSM 4304
    Gene: cofE, AF_2256
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2phnb1
  • Heterogens: MN, ACT, GDP, EDO, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2phnA (A:)
    qghmrvevfpveglplikegddlaelissrvrfedgdvlvvcstviskaegrirrleefn
    pserakeiaarigkpaefvqavleeseevlldfpfllvkakfgnvcvnagidasnveegs
    lllppldpdgsaeklrrrileltgkrvgviitdtngrcfrrgvvgfaigisgvkamkdwi
    grkdlygrelevtvecvadeiaafanllmgeggdgipavvvrglnvagegsmeeiyrsee
    edvirrclkrclgs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2phnA (A:)
    rvevfpveglplikegddlaelissrvrfedgdvlvvcstviskaegrirrleefnpser
    akeiaarigkpaefvqavleeseevlldfpfllvkakfgnvcvnagidasnveegslllp
    pldpdgsaeklrrrileltgkrvgviitdtngrcfrrgvvgfaigisgvkamkdwigrkd
    lygrelevtvecvadeiaafanllmgeggdgipavvvrglnvagegsmeeiyrseeedvi
    rrclkrcl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2phnB (B:)
    qghmrvevfpveglplikegddlaelissrvrfedgdvlvvcstviskaegrirrleefn
    pserakeiaarigkpaefvqavleeseevlldfpfllvkakfgnvcvnagidasnveegs
    lllppldpdgsaeklrrrileltgkrvgviitdtngrcfrrgvvgfaigisgvkamkdwi
    grkdlygrelevtvecvadeiaafanllmgeggdgipavvvrglnvagegsmeeiyrsee
    edvirrclkrclgs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2phnB (B:)
    mrvevfpveglplikegddlaelissrvrfedgdvlvvcstviskaegrirrleefnpse
    rakeiaarigkpaefvqavleeseevlldfpfllvkakfgnvcvnagidasnveegslll
    ppldpdgsaeklrrrileltgkrvgviitdtngrcfrrgvvgfaigisgvkamkdwigrk
    dlygrelevtvecvadeiaafanllmgeggdgipavvvrglnvagegsmeeiyrseeedv
    irrclkrcl