PDB entry 2pf5
View 2pf5 on RCSB PDB site
Description: Crystal Structure of the Human TSG-6 Link Module
Class: cell adhesion
Keywords: link module; hyaluronan-binding domain; alpha/beta domain, cell adhesion
Deposited on
2007-04-04, released
2007-06-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.196
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: tumor necrosis factor-inducible protein tsg-6
Species: Homo sapiens [TaxId:9606]
Gene: TNFAIP6, TSG6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2pf5a_ - Chain 'B':
Compound: tumor necrosis factor-inducible protein tsg-6
Species: Homo sapiens [TaxId:9606]
Gene: TNFAIP6, TSG6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2pf5b_ - Chain 'C':
Compound: tumor necrosis factor-inducible protein tsg-6
Species: Homo sapiens [TaxId:9606]
Gene: TNFAIP6, TSG6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2pf5c_ - Chain 'D':
Compound: tumor necrosis factor-inducible protein tsg-6
Species: Homo sapiens [TaxId:9606]
Gene: TNFAIP6, TSG6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2pf5d_ - Chain 'E':
Compound: tumor necrosis factor-inducible protein tsg-6
Species: Homo sapiens [TaxId:9606]
Gene: TNFAIP6, TSG6
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2pf5e_ - Heterogens: SO4, 2PE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2pf5A (A:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak
Sequence, based on observed residues (ATOM records): (download)
>2pf5A (A:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpktgiidygirlnrserwdaycynp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2pf5B (B:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak
Sequence, based on observed residues (ATOM records): (download)
>2pf5B (B:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivgpncgfgktgiidygirlnrserwdaycynph
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2pf5C (C:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak
Sequence, based on observed residues (ATOM records): (download)
>2pf5C (C:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkncgfgktgiidygirlnrserwdaycynph
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2pf5D (D:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak
Sequence, based on observed residues (ATOM records): (download)
>2pf5D (D:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynph
- Chain 'E':
Sequence, based on SEQRES records: (download)
>2pf5E (E:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak
Sequence, based on observed residues (ATOM records): (download)
>2pf5E (E:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
igiidygirlnrserwdaycynpha