PDB entry 2pf5

View 2pf5 on RCSB PDB site
Description: Crystal Structure of the Human TSG-6 Link Module
Class: cell adhesion
Keywords: link module; hyaluronan-binding domain; alpha/beta domain, cell adhesion
Deposited on 2007-04-04, released 2007-06-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.196
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tumor necrosis factor-inducible protein tsg-6
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFAIP6, TSG6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2pf5a_
  • Chain 'B':
    Compound: tumor necrosis factor-inducible protein tsg-6
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFAIP6, TSG6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2pf5b_
  • Chain 'C':
    Compound: tumor necrosis factor-inducible protein tsg-6
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFAIP6, TSG6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2pf5c_
  • Chain 'D':
    Compound: tumor necrosis factor-inducible protein tsg-6
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFAIP6, TSG6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2pf5d_
  • Chain 'E':
    Compound: tumor necrosis factor-inducible protein tsg-6
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFAIP6, TSG6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2pf5e_
  • Heterogens: SO4, 2PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pf5A (A:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak

    Sequence, based on observed residues (ATOM records): (download) 
    >2pf5A (A:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpktgiidygirlnrserwdaycynp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pf5B (B:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak

    Sequence, based on observed residues (ATOM records): (download) 
    >2pf5B (B:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivgpncgfgktgiidygirlnrserwdaycynph

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2pf5C (C:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak

    Sequence, based on observed residues (ATOM records): (download) 
    >2pf5C (C:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkncgfgktgiidygirlnrserwdaycynph

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2pf5D (D:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak

    Sequence, based on observed residues (ATOM records): (download) 
    >2pf5D (D:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynph

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2pf5E (E:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
ivkpgpncgfgktgiidygirlnrserwdaycynphak

    Sequence, based on observed residues (ATOM records): (download) 
    >2pf5E (E:)
gvyhrearsgkykltyaeakavcefegghlatykqleaarkigfhvcaagwmakgrvgyp
igiidygirlnrserwdaycynpha