PDB entry 2pe6

View 2pe6 on RCSB PDB site
Description: Non-covalent complex between human SUMO-1 and human Ubc9
Class: protein binding, ligase
Keywords: sumo, ubiquitin-like, conjugation, smt3, ubc9, protein binding, ligase
Deposited on 2007-04-02, released 2007-04-17
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.225
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SUMO-conjugating enzyme UBC9
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2I, UBC9, UBCE9
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63279 (3-160)
      • cloning artifact (0-2)
    Domains in SCOPe 2.01: d2pe6a_
  • Chain 'B':
    Compound: Small ubiquitin-related modifier 1
    Species: Homo sapiens [TaxId:9606]
    Gene: SUMO1, SMT3C, SMT3H3, UBL1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d2pe6b_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2pe6A (A:)
    gshmsgialsrlaqerkawrkdhpfgfvavptknpdgtmnlmnwecaipgkkgtpweggl
    fklrmlfkddypssppkckfepplfhpnvypsgtvclsileedkdwrpaitikqillgiq
    ellnepniqdpaqaeaytiycqnrveyekrvraqakkfaps
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2pe6B (B:)
    msdqeakpstedlgdkkegeyiklkvigqdsseihfkvkmtthlkklkesycqrqgvpmn
    slrflfegqriadnhtpkelgmeeedvievyqeqtgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2pe6B (B:)
    yiklkvigqdsseihfkvkmtthlkklkesycqrqgvpmnslrflfegqriadnhtpkel
    gmeeedvievyqeq