PDB entry 2pd1

View 2pd1 on RCSB PDB site
Description: Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea
Class: structural genomics, unknown function
Keywords: unknown function, NE2512 protein, structural genomics, APC7253, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG
Deposited on 2007-03-30, released 2007-05-01
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: 0.16
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein
    Species: Nitrosomonas europaea [TaxId:915]
    Gene: NE2512
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82S47 (2-101)
      • cloning artifact (0-1)
      • modified residue (2)
      • modified residue (76)
      • cloning artifact (102)
    Domains in SCOPe 2.06: d2pd1a1, d2pd1a2, d2pd1a3
  • Chain 'B':
    Compound: hypothetical protein
    Species: Nitrosomonas europaea [TaxId:915]
    Gene: NE2512
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82S47 (2-101)
      • modified residue (2)
      • modified residue (76)
    Domains in SCOPe 2.06: d2pd1b_
  • Chain 'C':
    Compound: hypothetical protein
    Species: Nitrosomonas europaea [TaxId:915]
    Gene: NE2512
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82S47 (2-101)
      • modified residue (2)
      • modified residue (76)
      • cloning artifact (102)
    Domains in SCOPe 2.06: d2pd1c2, d2pd1c3
  • Chain 'D':
    Compound: hypothetical protein
    Species: Nitrosomonas europaea [TaxId:915]
    Gene: NE2512
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82S47 (2-101)
      • modified residue (2)
      • modified residue (76)
      • cloning artifact (102)
    Domains in SCOPe 2.06: d2pd1d2, d2pd1d3
  • Heterogens: ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pd1A (A:)
ghmtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafad
eagrqahlngqiaaalmanaatllssppniekvellaaklpags

    Sequence, based on observed residues (ATOM records): (download) 
    >2pd1A (A:)
ghmtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafad
eagrqahlngqiaaalmanaatllssppniekvellaaklpag

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pd1B (B:)
ghmtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafad
eagrqahlngqiaaalmanaatllssppniekvellaaklpags

    Sequence, based on observed residues (ATOM records): (download) 
    >2pd1B (B:)
mtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafadea
grqahlngqiaaalmanaatllssppniekvellaaklpa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2pd1C (C:)
ghmtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafad
eagrqahlngqiaaalmanaatllssppniekvellaaklpags

    Sequence, based on observed residues (ATOM records): (download) 
    >2pd1C (C:)
mtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafadea
grqahlngqiaaalmanaatllssppniekvellaaklpag

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2pd1D (D:)
ghmtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafad
eagrqahlngqiaaalmanaatllssppniekvellaaklpags

    Sequence, based on observed residues (ATOM records): (download) 
    >2pd1D (D:)
mtklalfvrleakpgqeaaladflasalplanaesgttawfalkfgpstfgvfdafadea
grqahlngqiaaalmanaatllssppniekvellaaklpag